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The initial soil microbiota impacts the potential for lignocellulose degradation during soil solarization
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Data Policy
… embargo starting at construct or strain delivery.  Detailed sequence information and constructs are made publicly …
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Impact of fire on active layer and permafrost microbial communities and metagenomes in an upland Alaskan boreal forest
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Natural Prodcast Episode 8: Eric Schmidt
… you maybe explain what’s going on with their biology and why they’re so important to natural products? ERIC:  Sure. … I’ve seen you give a few talks on that. Can you tell us why cone snails are so cool? ERIC:  So cone snails are … turns a peptide, for example, from a disordered sequence into an antibiotic that kills bacteria through a …
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Synthesis
… capabilities support researchers exploring how to convert sequence into functional assessments. This is done by … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination …
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Understanding Wildfire Recovery, Starting in Soil
… A metagenomic look at the soil microbes present a year after a wildfire. The Science … which microbes in the soil persist after a wildfire — and why they thrive — gives forest managers more avenues to … builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful snapshot of what soils …
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JGI Announces 2023 Community Science Program Awardees
… on our Twitter. Samples were collected from across a permafrost age gradient from the Fox permafrost tunnel near Fairbanks, Alaska. (Courtesy of … Mary-Cathrine Leewis) Samples were collected from across a permafrost age gradient from the Fox permafrost tunnel near …
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Natural Prodcast Episode 16: Marcy Balunas
… does some really exciting work there. And I thought, well, why don’t we try to go to Alaska and see what we can find … with any kind of gene cluster identification, doing it with sequence alone you have to have some kind of a template to … between chemistry and sequence to get anywhere. Like that’s why I say the more you know, the more you know because it …
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Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica
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Metabolomics
… they grow, as well as different types of environments (e.g. soil, lake).  A wide range of metabolites are identified …
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Natural Prodcast Episode 4: Nancy Keller
… out introns and dealing with, you know, weirdness in the sequence. You know, some clusters are not clustered…   … it so easily with fungi. So…   NANCY: Yeah, I don’t know why. For example, with that – actually there’s a good talk … this and that. They’re doing all this 16S and I said, “Why don’t you just include the ITS too? It’s so easy to add …
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Viral Genomics Group
… Genomics group attempts to address this question in natural soil ecosystems by combining metagenomics with other omics … by snowmelt and host dynamics in a high-altitude watershed soil ecosystem. Microbiome 11, 237. … Roux, S. and Emerson, J. (2022) Diversity in the soil virosphere: to infinity and beyond? Trends in …
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