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Secondary Metabolites Program
… for fundamental growth, provide critical advantages to the organisms producing them, and are often involved in … deciphering regulatory networks, and refining experimental approaches to explore the synthesis and function of these … computational analyses of BGC size and complexity, BGC sequence composition, metabolic similarity & compatibility, …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the … in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of … with some of the latest developments in microbial genomics, metagenomics, and computational biology, and to empower them …
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Marine microbial community responses related to wetland carbon mobilization in the coastal zone
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CSP Large Scale Call
… and bioproducts production, leveraging systems-based approaches to unravel functional capabilities of plants, microbes and microbial communities, global carbon and nutrient cycling, and biogeochemistry — questions …
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Data Policy & Support
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Natural Prodcast Episode 17: Cassandra Quave
… culture-disconnected. Like we’ll take some soil samples and sequence all the bugs out of that or whatever. And so I was … of that, necessarily. And so I think the way I’d like to approach this is, number one, is I put a lot of emphasis in … methicillin-resistant Staphylococcus aureus . Can you share why finding treatments for these microbes is so important? …
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Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems
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DOE Metrics
… = 91 days; Actual Operation = 24 days due to significant sequencer downtime related to the shelter-in-place. ††† … on new computational developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – … datasets. [Download PDF] Q3 – Report on new computational approaches for the annotation of genomic data. [Download …
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Accelerating Metagenomics Discoveries with Deep Learning
… in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data … of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural … Deep learning algorithms can vectorize faces… … so, why not proteins?         … The U.S. Department of Energy …
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Synthetic Biology Lab
The Synthetic Biology lab is divided into a DNA synthesis production group and a synthetic biology … We focus our efforts on integrating database mining and sequence design with scaling the production of large, … novel enzymatic activities using phylogenomic driven approaches, and understanding the design principles for …
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Sequencing crop genomes: approaches and applications
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … to defend against RNA,” Roux noted, “although it’s unclear why this is so rarely detected.” Developing Approaches for Reconciling “Real” Big Data For the team, the …
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