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Natural Prodcast Episode 10: A Primer on Genome Mining
… just come out where I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome … Where did you see that research or those results heading? Toward an application, toward just better understanding fungal biosynthesis? DAN …
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The More the Merrier: Making the Case for Plant Pan-genomes
… evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their … two genome copies, one from each parent. Having three or more genome copies from additional parents or duplication, … types don’t interbreed. “Preliminary artificial crossing experiments between ancestral and recent  B. hybridum …
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Secondary Metabolites Program
… of cells and allow for substrates to be directed towards secondary metabolite synthesis. We are currently …
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Data Ecosystem
… JGI and KBase are designated DOE Office of Science Public Reusable Research (PuRe) Data Resources are authoritative …
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A More Intuitive Phytozome Interface
… interfaces they have come to rely on from Phytozome, with a more intuitive interface, deployed on much more maintainable software and hardware infrastructure. … codebase are no longer supported, and there are now much more powerful and flexible tools available for building high …
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Katherine Louie
… new, advanced mass spectrometry research products such as stable isotope probing (SIP) to assess metabolite turnover, DNA-SIP for …
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Natural Prodcast Episode 4: Nancy Keller
… coming out of that conference, and there should be a few more in the feed, that I’m releasing along with this one, at … I enjoyed your talk today. It was another great example of probing fungi for natural products and finding new things. … products could do to us. So I’d say my initial entry was more, sort of, in an agricultural sense in that both on what …
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JGI Early Career Researchers Featured in mSystems Special Issue
… and Metagenome Program head Emiley Eloe-Fadrosh outline more targeted approaches to reconstruct individual microbes … in soil for the first time. A second approach known as DNA stable isotope probing (DNA SIP) relies on incubating DNA … genome assembly from metagenomes. This is a critical step toward better understanding the impact of viruses upon …
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A Sorghum Pangenome Opens More Doors to Discovery
… insight into drought tolerance, biomass production and more — however, a single reference genome shows only one … for this plant. In other lines around the world, much more genetic diversity exists.  Now, researchers have … to plants relevant to national energy priorities. More than a discovery in itself, this pangenome is a tool. …
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Integration of Metagenomic and Stable Carbon Isotope Evidence Reveals the Extent and Mechanisms of Carbon Dioxide Fixation in High-Temperature Microbial Communities
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Mission
… to enhance crop resilience, improve soil health, and make more efficient use of marginal lands and waste feedstocks … are out of scope, as are marine-focused projects (more than 185 km from land). … More Details on the JGI …
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Biodesign
… tools — including strain engineering — to make them more user accessible Synthetic Biology Informatics Group : a … More Resources …
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