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Plant Program
… and anti-pest compounds.  The program is working to expand genomic resources for key plant species, enhancing our … accessions) and protocols (transformation, crossing, mutagenesis) are available to the community.   … EcoFABs link … It is now available for both eukaryotic and microbial metagenome assemblies. It is also available as an app in KBase …
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JGI Workshops at PAG
Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With advances in genomics technologies, keen interest in the bioenergy and … of this field and bring it to the attention of the wider genomics community. Jan. 13 workshop: BER Plant Genomic …
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Natural Prodcast Episode 1: The Primer, Part 1
… that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic biology, that maybe … at Scripps Institution of Oceanography. He got me into genomics of microbes, specifically of some that lived in the … tree and became incorporated. And because it had some advantage to the tree – it almost certainly, you know, prevents …
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Natural Prodcast Episode 17: Cassandra Quave
… of ground – her book, bioprospecting vs biopiracy, early stage drug discovery in general, and a possible data-driven … there, they just are going to be there in different percentages of relative abundance. But again, going back to … that’s Q-U-A-V-E E-T-H-N-O-B-O-T, also on Instagram at the same handle. The book will be out on October …
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Examples: Successful LOIs & Submissions
… submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User … LOI #2 … CSP New Investigator Submission … CSP Functional Genomics Submission … FICUS Example #1 … FICUS Example #2 …
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What Happens To a Rainforest When You Dial Up Drought?
… happens to that storage when a rainforest hits a drought. Tag along with their experiments in a fully enclosed, …
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JGI@25: Using Team Science to Build Communities Around Data
… for all fungi families — essentially, the foundation for an encyclopedia of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would …
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A One-Stop Shop for Analyzing Algal Genomes
… greater bioeconomy. By bringing together publicly available genomic data on algae into one place, PhycoCosm allows users … sequence and understand. A team of researchers led by Algal Genomics Program lead Igor Grigoriev and data scientist Alan … Genomes and Microbiomes (IMG/M) system for microbial and metagenome datasets, MycoCosm for comparative analysis of …
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Natural Prodcast Episode 7: Ben Shen
… on DNA sequencing and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a … enediynes to the market in 2001 with a drug called Mylotag. Wyeth was later acquired by Pfizer in 2009. So, a …
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Protocols
Weight DNA extraction: … RNA Extraction Protocols: … iTag protocols: …
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Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1
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Single Cell Research Group
… genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic potential … focused on the application of  function-driven single-cell genomics . Here, single cells are characterized and selected … virus diversity and host interactions through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., …
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