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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … This work was supported by the U.S. Department of Energy Office of Science under Contract No. …
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Overview of the Genomes OnLine Database (GOLD)
… TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked … Data Collaborative ( NMDC ) and the DOE Systems Biology Knowledgebase ( KBase ) — and aims to extend these …
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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … DAN: Yeah, yeah. The more data you generate, the more knowledge you can generate. So that’s why we are still … Episode Transcript … This the second episode of Natural Prodcast, which continues a conversation from the …
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A Recommendation for Naming Transcription Factor Proteins in the Grasses
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … that we can correlate environmental signals back to active transcription. There’s always been a big mystery in the … Episode Transcript … This is episode 5 of Natural Prodcast, our conversation with Brad Moore, a …
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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. The … gene clusters (BGCs.) As reported in the recent Database issue of the journal Nucleic Acids Research , … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … it’s probably going to help you some to have some basic knowledge of modern biology. We’re trying to keep this as … Episode Transcript … This is the first episode of Natural Prodcast, a podcast produced by the US Department of …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a … one of the tools that researchers can apply to study the transcription factors that control how genes are turned on …
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User Support
… Notice Effective July 27, 2026, the JGI will move to a new login service, requiring the use of an ORCID account with two-factor authentication enabled … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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Genesis and Expansion of Metazoan Transcription Factor Gene Classes
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