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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available fungal … in the JGI's IMG portal for mitochondrial ribosomal RNA sequences. The next step applied metagenomic binning … The work conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a framework essential to … Publication: Tyler BM et al. Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis . Science. 2006 Sep …
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s … a pipet again except for, of course, some cases when journalists come when they want to see you handle a pipet for … time when NAR, the Nucleic Acids Research that’s a journal that– Dan Udwary: Yeah. Marnix Medema: takes these …
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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome … Cambridge University University in 2005, where he studied RNA editing and cancer genetics. Dr. Blow carried out … BS in Biochemistry and Biological Chemistry, Nottingham University, UK PhD in Genomics, University of …
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Validation of two ribosomal RNA removal methods for microbial metatranscriptomics
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Expansion of the global RNA virome reveals diverse clades of bacteriophages
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… This year’s list features 6,900 researchers working in 21 fields.  Congratulations to the  2022 Highly Cited … influence in their chosen field or fields through the publication of multiple highly cited papers during the last … anniversary, published in  Nucleic Acids Research .  ID’ing RNA viruses with ease : Searching for RNA sequences within a …
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science … from University of California (UC), San Diego and Scripps Institution of Oceanography (SIO). You can find the podcast on Apple , Google , Spotify , Stitcher , …
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Sequencing Technologies & Products
…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. … An assay used for profiling transcription factor binding sites across entire genomes. This technology has been …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have … and test a ribonuclease capable of knocking down human RNA the way that CRISPR-Cas9 systems snip DNA. This could eventually lead to applications allowing for genome editing in RNA, rather than DNA alone. “It has become a tool …
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Comparative Genomics of the Ectomycorrhizal Sister Species Rhizopogon vinicolor and Rhizopogon vesiculosus (Basidiomycota: Boletales) Reveals a Divergence of the Mating Type B Locus
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Revisiting the sequencing of the first tree genome: Populus trichocarpa
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