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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint … , but circular. 10% of the genome encoded natural product pathways. Dan: Yeah, that’s kind of a trend now. But at the … elaborate chemicals with fantastical chemical structure and complexity. And obviously, all these reactions are catalyzed …
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Data Policy
… Data produced and released by the US Department of Energy (DOE) Joint Genome … Embargo : A period in which data is not publicly available in JGI … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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JGI-TMF Critical Minerals and Materials Call
… The joint Critical Minerals and Materials call represents a unique opportunity for … provides customized analysis, the JGI also participates in publication of results. Go here for additionial information, … Proposals should be submitted through the Molecular Foundry User …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new potential … as a resource for AI-driven approaches to predicting fungal metabolic traits from genomic data to understand how …
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Secondary Metabolites Advisory Committee
… The SMAC is chartered by the Secondary Metabolites Program Head and report back to them. The Committee …
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Frequently Asked Questions: Project Management
… Eukaryotic projects: Kerrie Barry or Vivian Ng Prokaryotic projects: Tijana Glavina del Rio , Danielle Graham , … You can visit the Products & Offerings section of our website for more details, including a downloadable pdf of products categorized … The majority of JGI projects come from the user community. Find …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to … to identify data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or … other plant-associated fungi. Their analysis identified fungal gene families that help determine if these fungi act … They play key roles in maintaining the plant’s health and diversity, which can in turn boost yields for both food and …
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists … Download plant, algal, fungal and microbial genomes and metagenomes — … GOLD is a web resource for comprehensive access to information regarding genome and metagenome …
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Detailed analysis of the D-galactose catabolic pathways in Aspergillus niger reveals complexity at both metabolic and regulatory level
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Igor Grigoriev
… Grigoriev joined the JGI in 2003, following his postdoctoral training at UC Berkeley and work in the pharmaceutical industry. He holds joint appointments as Fungal and Algal Program Head at the JGI, a Senior Scientist … Igor Grigoriev is the Fungal & Algal Science Program Head at the JGI. Click to learn …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… The Joint Genome Institute and the Molecular Foundry have launched a joint Critical Minerals and Materials … Access to the Molecular Foundry and use of JGI capabilities is free. The JGI supports remote … The program seeks user proposals that integrate genomics with …
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