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JGI Portals
… expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and tools in support of DOE mission priorities. Data discoverability and … the JGI will move to a new login service, requiring the use of an ORCID account with two-factor authentication enabled …
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Products
… Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of the product and deliverables as well as target cycle … assembled to less than 5kb in length, cloned into vector of choice Glycerol stock of sequence verified clone 102/NA …
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Multisubstrate specificity shaped the complex evolution of the aminotransferase family across the tree of life.
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Natural Prodcast Episode 9: Roger Linington
… DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … program, which stands for International Cooperative Biodiversity Groups, and it’s this great program funded by the … The information is scattered throughout literature. It’s across a huge array of different dates, journal titles, …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … (Berkeley Lab), has generated a more accurate phylogenetic tree tracking the evolution of  Dothideomycetes fungi. The  …
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JGI Advisory Committees Code of Conduct
… Guiding Principles All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to … and JGI staff with respect and consideration, valuing a diversity of views and opinions; Exercise tolerance for …
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Natural Prodcast Episode 6: Marc Chevrette
… DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … similar to like human crops like corn. There’s low genetic diversity in the crop. So they’re susceptible to disease. … coming into the system. Now, that’s probably not true across all of nature, but it’s a simplifying assumption that …
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … episode is our conversation with Nancy Keller, a fantastic fungal natural products researcher from the University of … larger eukaryotic microbes!” It’s one of my missions in life to get people to think more about fungi.    ALISON: …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … ever assembled. The team identified 15 core genes shared across all fungi, and found that some of these genes have … as reliable markers for classifying species and studying diversity in complex biological systems. By making the tools …
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A new view of the tree of life
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Project Management Office
… The JGI Project Management Office carries out a number of activities to facilitate world-class science. PMO works … staff to onboard users and guide them through the process of working with our facility. This includes help with: … Please review our FAQ in advance of contacting the PMO office.  …
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Fungal Friends or Foes in Plant Roots
… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … other plant-associated fungi. Their analysis identified fungal gene families that help determine if these fungi act … They play key roles in maintaining the plant’s health and diversity, which can in turn boost yields for both food and …
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