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Natural Prodcast Episode 5: Brad Moore
… most of that out. But anyway, here’s our conversation with one of my favorite human beings, Brad Moore. — Dan: How do I … and SIO. Oh, I should say what those are. Brad: What’s SIO, for all those listeners out there? Dan: Scripps Institution … Sequencing Program, and they worked with us to sequence two genomes. Those were of Salinospora tropica and arenicola . …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… manage the growth, yield and climate resilience of algae — for potential use as biomass or in biomass conversion to … there.  A  Communications Biology article highlights how one microalga collected from water on the ice surface … ( The annotated algal genome is available on the JGI’s PhycoCosm data portal.) This research not only sheds light …
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The Power of One, Amplified
… approaches including amplicon and metagenomic sequencing. For example, they showed that the composition of the … that were missed within paired metagenome assembled genomes (MAGs), and that dominant populations varied with … is akin to the structure of social media networks where one social media group may have a relatively constrained set …
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Driving through stop signs: predicting stop codon reassignment improves functional annotation of bacteriophages
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JGI@25: The Little Alga That Could
… to those who study it) a powerful reference organism for studying photosynthesis and cell motility. It’s also a … JGI shows that those sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific … was going to stand the test of time.” … C. reinhardtii on PhycoCosm … C. zofingiensis on Phytozome … Algal Datasets … …
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Partnerships: Myco-Ed
The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based … techniques and data analyses compile original data for improving fungal genomic resources empower students … Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ …
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Institutional User Agreements
Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples … for the appropriate contact name, email address and phone number for the signing official. User Institutions with … and delays on the work. The transfer of a proposal from one commercial institution to a new commercial institution …
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Ancient Algae Reveal Secrets of Plant Evolution
… have enhanced our understanding of how early plants transitioned from water to land. Key gene groups involved in stress … of how plants adapted to terrestrial life paves the way for innovations in sustainable agriculture and clean energy. … The algal genomes sequences are available on the JGI’s  PhycoCosm portal. … This work was funded by the US National …
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Secondary Metabolites Program
… algae and plants. These molecules, which are not essential for fundamental growth, provide critical advantages to the … and their roles in the environment, can unlock new avenues for bio-based products and bioenergy crop enhancement. The … factors and determine their binding sites across multiple genomes. Computational prediction of heterologous …
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Mission
… and resources. Our vision is to lead genomic innovation for a sustainable bioeconomy. ALL PROPOSALS must support the … DNA sequencing, informatics, and technology development pioneered at the U.S. DOE genome centers at Lawrence Berkeley … strains, or enzymes to convert plant biomass components into fuels, chemicals, and bioproducts, or to control …
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Special Initiatives & Programs
… sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded through  … Early Career Research Program .   If “BERSS” is not mentioned in the BER funding call, proposals are NOT eligible for … sequencing, synthesis, or metabolomics should apply to one of the JGI’s  calls for user proposals . … The JGI is …
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Publication Policy
… and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts to do so, and JGI expects … of data produced at the facility, provided this is done in a timely fashion. The publications resulting from …
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