Search

… User Facility located at Berkeley Laboratory, built off past experience in developing a secondary metabolites portal within the Integrated Microbial Genomes and Microbiomes (IMG/M) system known as … BGC sequences. Expansion of the SMC to include fungal, plant, viral, and metagenome data is currently underway. …

… Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Welcome back to Natural … ag[riculture] and I really liked – I became interested in plant disease in part because of what happened in my Peace … challenges were associated with getting good transformation systems going. That has a lot to do with, well, the fact …

…   Revisit past projects …

… Past projects …

… Past projects …

… and using engineered biosynthetic pathways and enzyme systems to do synthetic analoging of some really complex … And I’m also dying to talk in more detail about the JGI Secondary Metabolism Collaboratory , which is the big huge … of thought with that. So some people are interested in cave microbial– people are interested in the more extreme …

… performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems biology data and tools to help predict biological … these missions, and to expand upon highly successful past collaborations, the DOE JGI, NERSC and KBase issued a …

… Pennacchio PMO Lead, Metabolomics Program Kerrie Barry Plant and Algal Genomics Natasha Brown Supply Chain Manager … Tijana Glavina del Rio Metagenomics         Danielle Graham Microbial Program Nancy Hammon Workflow Planning Manager …

…   Want to see past projects? Read more below         …

… and other tools. By bringing users together through our systems, we build far-reaching communities of researchers to … KBase is a critical partner in enabling systems biology analyses, such as metabolic modeling, that … from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI and KBase are …

… in studies of complex biological and environmental systems. We optimize our service to the community through … crops, enhance biomass conversion efficiency, and discover microbial pathways for producing biofuels, biochemicals, and … and Materials (CMM): Genomic studies of microbial and plant metabolism reveal biological routes to recover, reuse, …

… further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, those molecules not essential for … edits affect functionality.  CRAGE allows for the transplanting of these BGCs from one organism into an alternate …