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David Goodstein
… across the plant kingdom. Nucleic acids research 51 (16), 8383-8401. JT Lovell et al., 2022. GENESPACE tracks … gene copy number variation across multiple genomes.  eLife 11, e78526. Li et al., 2021.  Plant Pan-Genomics Comes of Age . Annual Review of Plant Biology 72, 411. Gordon et al., 2020.  Gradual polyploid genome evolution …
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Danielle Goudeau
… cell sorting, genome amplification, PCR screening, and 16S sequencing. She also develops novel flow cytometry …
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Examples: Successful LOIs & Submissions
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Game On: High School Students Drive Everglades Metagenomics Study
… used to map their routes had been taken. Sifting through 16 Trillion Bases of DNA Taking into consideration some … The class had to sift through over 55 billion genes and 16 trillion DNA bases of data, to figure out what to study …
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Tanja Woyke Elected to American Academy of Microbiology
… the 68 new Fellows in the Class of 2020, selected from 118 nominees. The selection process for AAM Fellows is based … Woyke has led JGI’s Microbial Genomics Program since 2009 and heads the Single Cells group. She has also served as … the AAM Fellows in this cohort. Go here for the full AAM news release. Woyke is also one of the organizers for the …
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Streamlining Regulon Identification in Bacteria
… sequencing, they were able to identify the target genes of 11 sigma factors in Streptomyces coelicolor . The Impact As … and were able to identify the associated target genes in 11 of those. That work published in Nature Communications on … most recent study, only 12 sigma factors and 200 genes (or 209 sigma factor-target gene pairs) had been experimentally …
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Secondary Metabolites Program
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Forming Scientific Connections and Building Community
The 11th cohort of JGI-UC Merced interns pick highlights from … Malmstrom, Nandita Nath & W. Berkeley Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… in these gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on …
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
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Jeremy Schmutz
… co-led the team that finished the DOE human chromosomes 5, 16, and 19. Following the completion of the human genome …
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Finding the Fermenters
… genome on KBase … Narrative for Porphyromonadaceae sp. W3.11 genome on KBase … The phenotype and genotype of …
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