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Viral Genomics Group
… While an ever-increasing number of phage and virus genomes have been assembled and reported from metagenomes, our understanding of the impacts of these viruses … measurements ( Who is active when/where, and how? ). The JGI Viral Genomics group attempts to address this question …
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Sequencing Technologies & Products
… Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing … with Science Programs and Operations teams to enable the JGI’s focus on expanding molecular capabilities and … capabilities.    Overview of sequencing products The JGI operates highly scaled short- and long-read sequencing …
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Access to Rock Star Scientists
… Through the JGI-UC Merced Genomics Internship, graduate students Candace … Systems Group “Everyone here is very kind and really open to talking about their work. It’s fun to be around … kinds of topics. It’s amazing to have access to rock star scientists who have done the groundbreaking work you’ve been …
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FICUS Overview
… only simplifies and streamlines this process, but enables scientists to conduct fundamental science experiments in … free to the PI by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides …
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Data Policy
… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and information sharing. We also recognize the need … : A period in which data is not publicly available in JGI systems or outside repositories. Full access is granted …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and … not nearly enough. And so I thought it would be good to spend maybe a couple of minutes just talking to you and … interested in science as much, and my parents weren’t scientists either. So it was sort of just taking classes and …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… a podcast about natural products and the science and scientists of secondary metabolism. Hey everybody, this is … from that. Evolution doesn’t invent stuff to see what happens and keep it alive for a while. It does it because it’s … thing. Another way to approach it is more related to what JGI does, which is sequence genomes. And we just published …
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Institutional User Agreements
… must have their home/employing institution sign a JGI Non-Proprietary User Agreement and Appendix. An Appendix identifies the type of work or specific … for the signing official. User Institutions with an active JGI User Agreement older than January 2024 will be required …
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Natural Prodcast Episode 2: The Primer, Part 2
… “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi, again. This is … say like lipid bilayer, you know, in the cell.  DAN: It depends on lifestyle. So there are lots of different organisms … have that goal. That’s not as much our goal here at the JGI – we are not a medicinally focused organization. And so, …
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Fungal & Algal Program
… and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … culture collections to produce hundreds of diverse algal genomes, which will be made accessible through the PhycoCosm … portal. The Fungal & Algal Program aims to streamline genome analysis workflows for microbial eukaryotes, build …
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The JGI Data Portal: Improving User Experience
… The human-centered, agile collaboration between the JGI and the information technology company Truss has … from the other JGI Portals, as well. “For thousands of scientists around the world, the JGI Genome Portal is a critical resource — it provides access to …
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Offerings & Capabilities
… The central mission of the JGI’s Genomic Technologies department is   ensuring users … amenable to statistical analysis. To meet these needs, the JGI deploys state-of-the-art sequencers and platforms …
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