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Fishing for Novel Cellulose Degraders
… screen that they described as a “bait and hook” approach to isolate cellulose-degrading microbes. They first bound … particles that served as the “bait,” and then they isolated the particles through the “hook” of … bacterial laboratory models to set a reference for its performance, and then applied it to environmental samples from …
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Improving Synthetic Biology Communication: Recommended Practices for Visual Depiction and Digital Submission of Genetic Designs
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Products
… ), binning Depends on project Microbial Minimal Draft, Isolate Draft quality microbial assembly of short-read … annotation ( IMG ) 280/298 Microbial Improved Draft, Isolate High quality draft assembly of long-read sequence …
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Single Cell Research Group
… N. C. 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.” Nat … R., … Banfield J. F., Hugenholtz P., Woyke T . Minimum information about a single amplified genome (MISAG) and a … Former Lab Members …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… people were trying to locate and sequence and get the information on biosynthetic gene clusters. And I’ll explain … have the genome sequence before we have almost any other information about many organisms. In a lot of cases, certainly … you can associate a specific microbial genome [as] being isolated from this particular source. So we have very …
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Micro-Scale Applications Group
… of single-cell genomes and directly link functional information with individual cells. Research Team    … the JGI now uses laser microdissection to selectively isolate and sequence microbial aggregates after first …
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Natural Prodcast Episode 1: The Primer, Part 1
… why we want to do this. And also to provide a little more information and context for people who might possibly be … the bark from three yew trees in order to make enough or to isolate enough taxol to give one dose to one person. ALISON: … to figure out ways to get around this. Often when you can’t isolate enough of a compound, then you turn to synthetic …
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Finding the Fermenters
… the range of bacteria and archaea that rely on this form of metabolism, researchers recently compiled a list of … uncharacterized prokaryotes, including two bacteria isolated by their lab. KBase was used to rapidly assemble … and annotate the taxonomy and function of these two isolates. The combined taxonomic and functional annotations …
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JGI Portals
… GOLD is a web resource for comprehensive access to information regarding genome and metagenome sequencing … on their metagenome sequence, in the context of reference isolate genomes included from the IMG/M system. … potential, antibiotic resistance genes, and ecosystem information. …
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CSP Large Scale Call
… The letter of intent must be submitted using our web-based form . Submitters whose LOIs/proposals are approved will … also be available to answer any questions prior to proposal submission.   …
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Power in isolation: insights from single cells
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Microbiome Data Science Team
…  14(11):1063-1071 Bowers RM, et al. (2017) Minimum information about a single amplified genome (MISAG) and a … (2017) 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.  Nature …
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