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CSP Functional Genomics
… ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily achievable …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a high-throughput AI-centric … through analyzing and harnessing genomic information from plants, fungi, algae, non-medical microbes, microbial …
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Industry Engagement Program
… JGI serves more than 2,500 users that predominately come from the public sector: academic and government institutions … Our metabolomics platform delivers rich metabolite profiles from diverse biological and environmental samples by using … accessible, AI-ready large-scale data repositories for genome information with analysis tools for mining and …
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Tour the IGB
… Take a virtual tour of the IGB, home of the DOE Joint Genome Institute. To navigate virtual tours of each floor, click and drag to look around the space, use the graphic rings to move about the … pointing device to zoom in and out. 1st floor 2nd floor 3rd and 4th Floors The JGI mural on the 3rd floor …
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A functional microbiome catalogue crowdsourced from North American rivers
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From Textbook to Real World Applications
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JGI@25: Using Team Science to Build Communities Around Data
… at over 180 organizations in 29 U.S. states and 35 countries. (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … these initial efforts: Spatafora and Jason Stajich from UC Riverside would focus on broad sampling of early diverging …
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How to Submit Sequencing Samples
… Sample QC Protocol JGI’s Total RNA Sample QC Protocol JGI’s Small RNA Sample QC Protocol DNA Extraction 101 : tips, kits, and protocols (from PacBio) Guidance for sample collection and storage (from PacBio) Best practices for High Molecular Weight DNA … Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your organisms? …
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FICUS
… FICUS call with EMSL begin with a Letter of Intent (LOI) from a researcher, briefly describing the project … The ranked proposal list, along with a recommendation from management at the JGI and the other participating … for FICUS Research describes the resources available from all the facilities participating in the FY25 call, …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free environments? … Program at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … the sugar glucose to the products including ethanol and 2,3-butanediol (BDO). To do so, the yeasts received …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free environments? … Program at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … the sugar glucose to the products including ethanol and 2,3-butanediol (BDO). To do so, the yeasts received …
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Publication Policy
… purpose of this policy is to establish communication norms around JGI contributions, ensure that all contributors to a … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators, and JGI … is done in a timely fashion. The publications resulting from such efforts should specify the collaborative nature of …
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