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FICUS Overview
… for User Science (FICUS) initiative was established in 2014 to encourage and enable researchers to more easily … at individual user facilities. A Letter of Intent is required. For accepted proposals, sequencing, synthesis, …
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Programs & Platform Leads
… capabilities to support BER's mission of achieving a predictive understanding of complex biological, earth, and … innovations that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary …
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Metabolomics
… small molecules play in diverse biological systems, sheds light on nutrient cycling, and leads to the discovery of new …
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A One-Stop Shop for Analyzing Algal Genomes
… of its kind, with an interactive browser that allows algal scientists and enthusiasts to look deep into more than … of this evolutionary diversity, algal genomes can be incredibly complex and difficult to sequence and understand. A … PhycoCosm’s genome browser to see their favorite alga’s predicted genes and their organization, and analyze genes in …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… conditions. A recent study shows that when salinity is reduced in its environment, this alga reveals a remarkable … that live there.  A  Communications Biology article highlights how one microalga collected from water on the ice … the changing salinity of the environment. ( The annotated algal genome is available on the JGI’s PhycoCosm data …
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Igor Grigoriev
… industry. He holds joint appointments as Fungal and Algal Program Head at the JGI, a Senior Scientist at … over 2500 fungal genomes in the JGI MycoCosm portal. In 2018, he launched scale-up of algal geomics and PhycoCosm portal. Dr. Grigoriev engaged … Igor Grigoriev is the Fungal & Algal Science Program Head at the JGI. Click to learn more …
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Effects of Polar Light Cycle on Microbial Food Web
… microbial communities change with the seasons. The Science Light-harvesting bacteria (phototrophs) in Antarctica’s Ace … Science Program. For most months each year, Ace Lake is covered in thick ice, with a combination of marine and … look very different across each section. The biggest changes occur in the top portions of the lake, they found. …
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Porphyra (Bangiophyceae) Transcriptomes Provide Insights Into Red Algal Development And Metabolism
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… On February 8, 2024, the DOE Joint Genome Institute and the … field may be difficult but EMSL can look at physiological changes after harvest treatment. Facility Contacts: JGI : … limited so that will have to be planned. Q5: Is travel covered by the FICUS proposal? A: Since there’s no money …
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New Lineages of Life Group
… conclusions .”  Nature Communications Volume 15 Article 9873. Buscaglia, M. et all (2024) “ Adaptation strategies of … marine ecosystems .”  The ISME Journal , Volume 18 Issue 1. Pitot, T.M., et al (2024) “ Conservative taxonomy … A predictive tool for microbial symbionts in environmental …
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Rex Malmstrom
… that provides JGI users access to the genomes of uncultured microbes.  His group also handles the Stable Isotope … for difficult user projects, including those that require fluorescence activated cell sorting and non-standard … brings a rhodopsin photosystem to unicellular marine predators.  PNAS 116 (41), 20574-20583 Couradeau, J.S. et al. …
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How Maize Makes An Antibiotic Cocktail
… By deciphering the zealexin synthesis pathway, this study makes it possible to harness the protective function of … used a battery of techniques. They screened panels of hundreds of maize lines for genetic variation in the ability … out four critical zealexin pathway genes. And they transferred genes of interest to tobacco ( Nicotiana benthamiana ), …
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