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FICUS Overview
… aims to encourage innovative research exploiting a diversity of capabilities. Previously, researchers had to … that truly integrated the capabilities of more than one facility. The FICUS initiative not only simplifies and …
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Expanding Virophage Diversity
… with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses … 10.9-42.3 Kb. Additionally, the gene counts have similarly gone up from 13-25 to 12-39. “Overall,” the team concluded, “we provide a global analysis of the diversity, distribution, and evolution of virophages.” Lead …
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Igor Grigoriev
… the pharmaceutical industry. He holds joint appointments as Fungal and Algal Program Head at the DOE Joint Genome … et al (2022) Wildfire-dependent changes in soil microbiome diversity and function.  Nature Microbiol. 7(9):1419-1430. … development reveals conserved genes behind complex multicellularity in fungi. Proc Natl Acad Sci U S A. …
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Natural Prodcast Episode 22: Alison Narayan
… … DAN UDWARY: Hey everyone. Welcome back to Natural Prodcast. This continues the … can it actually turn over? ALISON NARAYAN: So that’s an excellent question. I think that we need enzymes with good … made it onto our list is because we wanted to have diversity. And so we wanted a profile across that protein …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a … to identify data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced … proposals have contributed toward filling gaps on the fungal Tree of Life, including the 1000 Fungal Genomes …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… aspect of viruses in the environment — their sheer genetic diversity. As pioneers of this field, the JGI has leveraged metagenomics to … and grades their quality based on completeness. Along with expanding the viral diversity that IMG/VR features, teams at …
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Mission
DNA sequencing, informatics, and technology development pioneered at the U.S. DOE genome centers at Lawrence Berkeley … development. Develop an understanding of microbial and fungal metabolism necessary to design communities, new … … Microbes constitute the largest reservoir of biodiversity and functional versatility on Earth. Their …
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Frequently Asked Questions: Proposal Submission
… limits, and instructions.  Many of the submissions are done using web-based forms.   To view the proposal templates, … submission page , login using your JGI account (create one here if you don’t already have an account) and click the … activity. A few examples include: Convention on Biological Diversity Nagoya Protocol on Access and Benefit Sharing …
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Programs & Platform Leads
… drive innovations that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, …
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Evolution of a Fungal Gene Expression Regulator
… on the largest analysis of 5mC distribution across the fungal tree of life to date, involving more than 500 species … development. Summary With the aim of producing at least one reference genome for every family of fungi, the 1000 … User Facility, and others like it, are uncovering the true diversity of the fungal kingdom. The abundance of fungal …
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Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for … scales on multicore and many core architectures with the ultimate objective of facilitating omics-based scientific … ANI is used to ascertain the species specificity of single cells and genomes extracted from metagenomes, and also as a …
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