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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
As part of the JGI’s 25th anniversary celebration, the 2022 Annual Meeting featured speakers who shared a look back at the JGI’s history, from …
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Natural Prodcast Episode 2: The Primer, Part 2
… to the second episode of the Natural Prodcast. This is part 2 of our “primer” episode, so if you ended up here somehow … molecules and their discoveries over a stretch from 1940 to 2000. As you can see, from the 1940s, into the 50s into the …
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New Research Sheds Light on Diversity in the Deep Sea
… funded by the US-National Science Foundation grants OCE-0728391, OCE-0937404, OCE-1558795 to A-L.R, and OCE-2049478 and DBI-2047598 to K.A. We thank the Department of Energy Joint …
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Natural Prodcast Episode 3: The Primer, Part 3
… and listen to the first two parts ( part 1 is here and part 2 is here ) so you understand what’s happened so far in the … me to check her stat and she was absolutely correct. Since 2010 there have been eight new antibiotics added to the … from your cultures, but then you’re going to find another 20 or 30 secondary metabolism pathways that you didn’t even …
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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after … into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead with a …
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Natural Prodcast Episode 22: Alison Narayan
… has to do with the mechanism. And so these enzymes use O2, and one of those oxygen atoms gets incorporated into our product, and one of those oxygen atoms from O2 ends up as a molecule of water. DAN UDWARY: Mhm. So … Chemoenzymatic Tropolone Synthesis”, (preprint)  ChemRxiv.  2023.   doi: 10.26434/chemrxiv-2023-lvngd “Enabling Broader …
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JGI Hosts GPU Hackathon in May
WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing … is organizing nearly a dozen hackathons around the world in 2019, only the JGI hackathon is particularly focused on … of six teams will be hosted at the Hackathon, with 1-2 mentors per team. Participants will be expected to have …
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Natural Prodcast Episode 18: A CSP Primer
We don’t want to get a proposal that’s just asking for 20 microbial genomes. That is not a good fit for our annual … call where smaller proposals may be a fit. Still not 20 many microbes. We still we work in plates, right? We’re a … high throughput sequencing capabilities. Such as sending us 20 DNA samples is also not a good fit for JGI, even for the …
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Natural Prodcast Episode 7: Ben Shen
… right? BEN: Yeah, yeah. Well, we are at [10 to the] minus 12 [Molar concentration]- is sufficient to kill cells. So … company Wyeth that introduced enediynes to the market in 2001 with a drug called Mylotag. Wyeth was later acquired by … So, you may know the so-called Nagoya protocol, which prevents taking bio-resources from the native countries. So …
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Natural Prodcast Episode 16: Marcy Balunas
… say a clutch is probably the size of a golf ball and has 25 to 50 eggs. I’m guessing here.  DAN: Sure, sure.  MARCY: …
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Natural Prodcast Episode 9: Roger Linington
Yeah, that’s right. We were postdocs together in the mid 2000s, I guess. You were working for Brad Moore. I was … for those 50 journals. For – [it] varied -something like 20 years, and then we – I – forced the lab group to take a … about the topic we cared about. And that gave us about 12,000 molecules. And that was enough for us to build a basic …
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The Busy World of Deep Sea Eruptions
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