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Protocols
… Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA …
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An Automated Tool for Assessing Virus Data Quality
… can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … to this point, there has been a lack of fast and accurate tools for researchers to assess the quality of … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Science Programs
… The JGI’s Science Programs offer support to users and their research efforts.  JGI scientists lend their expertise to enhance the scientific impact of user projects, develop cutting-edge approaches for and with users, and create computational tools and resources for them. Their concerted efforts help …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… SMC – which is the new Secondary Metabolism Collaboratory data portal I’ve been working on with my colleagues Drew … of always working on natural products but just different tools and how to really access and manipulate these pathways … it’s– so far, so good. But we’ll add more hardware and more software as we need to go. JACLYN WINTER: You’re going to …
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Who We Are
… of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National … Systems Biology Knowledgebase and the National Microbiome Data Collective.    … other relevant organisms. We provide access to large-scale datasets and analysis tools for genomes, metagenomes, and …
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Natural Prodcast Episode 18: A CSP Primer
… that the Joint Genome Institute is a “Department of Energy user science facility”, and so today what you’re going to … did those sequences go? Like, what are the other scientific tools we offer people? TANJA WOYKE: Yeah. Also a really good … algal genomes, a lot of effort goes into generating these data sets. There’s a lot of manual work in terms of the …
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DAS Tool for Genome Reconstruction from Metagenomes
… The work aligns with the ETOP mission of providing JGI users with the most current technology and expertise in … to high (596 genomes) complexity. The environmental datasets included metagenomic data from Crystal Geyser in … from complex metagenomes than any of the single binning tools alone,” primarily because of its capacity to harness …
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Strain Engineering
… yeasts and algae previously with little to no genetic tools enabling heterologous expression and functional … The developed strains represent an additional phase of user-accessible project types, in which DNA-based molecules …
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Streamlining the Design-to-Build Transition with Build-Optimization Software Tools
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The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization
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Natural Prodcast Episode 12: Nadine Ziemert
… much I actually can learn just by really digging into the data and understanding what’s going on there. And now, … more into the meta genome mining. We started to build the tools for natural product researchers that easily can … to– DAN UDWARY: Yeah, that’s always a problem in academic software development. NADINE ZIEMERT: Yeah. And I think, …
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JGI-TMF Critical Minerals and Materials Call
… of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. All JGI data is made publicly available in accordance with the JGI’s Data Policy . In cases where the JGI provides customized … Proposals should be submitted through the Molecular Foundry User Portal . All proposals undergo technical review by JGI …
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