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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, it was only … portal offers a way for users to more easily access public data sets through a common set of metadata. For Steve …
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Frequently Asked Questions: Project Management
… then be used to submit proposals, sample and project metadata, and to access JGI tools and systems. … The Project Overview report includes project-level metadata such as the project name, current status, NCBI & JGI taxonomy, and data locations on the various JGI Portals. The Sample report …
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Products
… sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is complete. Raw metabolomics data is submitted to the  MassIVE repository . Not all …
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Homepage
…   Gain access to omics technologies generating community data at zero cost —  submit a proposal.  …
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Statement on the Use of Genomics Data
… of genomics through open access to resources and promoting data sharing to accelerate discovery and maximize the … to engage the community to inform necessary changes to JGI data policies. Since completion of the HGP, the JGI has sustained its commitment to uploading sequence data generated on behalf of its user community to NCBI as …
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Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data
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User Support
… Project Manager will facilitate project execution by: Metadata verification and coordination with IMG , GOLD and others for data annotation and submission Tracking, monitoring and … During this time, your Project Manager will: Coordinate JGI data analysts and other technical experts Track, monitor and …
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The Switchgrass Genome: Tools and Strategies
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Identifying genomic data use with the Data Citation Explorer
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Meraculous: De Novo Genome Assembly with Short Paired-End Reads
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Kjiersten Fagnan
… flows, and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC … hardware and worked closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was … of the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics department head.  Dr. Fagnan is …
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Sequencing Submission Requirements for DNA Synthesis
… GenBank File There are several easy-to-use open source tools for converting DNA sequence files into well-formed …
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