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The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions
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The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities
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Science Programs
… approaches for and with users, and create computational tools and resources for them. Their concerted efforts help …
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Integrating Experimentation with Data
… Automated Laboratories: Integrating Experimentation with Data” was held at the Seattle Marriott Waterfront in … and Synthetic Biology AI/ML-enabled Laboratory Automation, Data Integration and Modeling This three-day joint meeting … systems using advanced experimental and informatic tools at no cost. The JGI and EMSL are supported by the …
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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, it was only … portal offers a way for users to more easily access public data sets through a common set of metadata. For Steve …
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Products
… sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is complete. Raw metabolomics data is submitted to the  MassIVE repository . Not all …
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Homepage
…   Gain access to omics technologies generating community data at zero cost —  submit a proposal.  …
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Statement on the Use of Genomics Data
… of genomics through open access to resources and promoting data sharing to accelerate discovery and maximize the … to engage the community to inform necessary changes to JGI data policies. Since completion of the HGP, the JGI has sustained its commitment to uploading sequence data generated on behalf of its user community to NCBI as …
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Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data
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Natural Prodcast Episode 10: A Primer on Genome Mining
… now, just because of the ways that we can generate data. So, obviously, it’s very apparent to us here at the … little vague to me. What do you mean by putting a bunch of tools in one package? DAN UDWARY: Oh, sure. So if I wanted … problematic in a case where we have all the sequence data but none of the chemical data. So in meta-genomic …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… him about more recent work like ActDES, which is a curated database of actinobacteria for evolutionary studies, and … often end up realizing that what is defined by the KEGG [database], for example, is not enough even there. So it’s … I have the feeling that once we have the synthetic biology tools, we finally are in a position to exploit secondary …
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The Switchgrass Genome: Tools and Strategies
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