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Facility, the JGI plays a leadership role in enabling the frontiers of research related to DOE’s missions in bioenergy, carbon cycling and biogeochemistry. In … the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, and DNA …

… in: DNA and RNA sequencing, Sample and library preparation, DNA synthesis and pathway engineering Mass spectrometry … metabolites and unidentified features in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript … sequence Assembly, annotation ( IMG/M ), mapping 273/273 Metagenome Cell Enrichments Obtained by physical separation …

… a member of JGI’s Sample Management Group, attended a conference in Florida to discuss a JGI pilot project … Jonathan’s email request reached  Emiley Eloe-Fadrosh , the Metagenome Program Head at the  U.S. Department of Energy … do an environmental microbial community (metagenomic) soil study in an untouched region of the Everglades, the …

… associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are interested in how … partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and spatial …

… its partnership with NERSC and the DOE Energy Sciences Network (ESNet), the JGI has unique access to both expertise … specifically optimized for high-performance computing environments. … KBase is a critical partner in enabling systems … scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI …

PMO works with users, JGI scientists and technical staff to onboard users and guide them through the process of working … launching the user’s project. See below for details on each step. … Please review our FAQ in advance of contacting the PMO office.  … Before work can start on any …

The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce … from such efforts should specify the collaborative nature of the project, and authorship is expected to include …

Our research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … and diversity in the era of genome-resolved metagenomics. Nature Reviews Microbiology volume 20, 721–736 JC Villada, F …

… analyses, next-generation transcriptome de novo assembly, metagenome and metatranscriptome assembly, Hadoop based on … was responsible for the terabase scale data analysis in the cow rumen and sheep rumen metagenome projects. Standing at the …

Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing environments. The … sampled all at once from the same environment, called metagenomes. Why? Simon Roux, who led the research team and … the dice. There’s some evidence to support the idea. Study coauthor Stephen Nayfach, a JGI bioinformatics …

Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for … plant-fungal symbionts … Elucidation of the gene regulatory networks governing terpenoid-mediated plant environment …