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Data Policy
Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) … publication or citation of accession numbers in a peer-reviewed journal, or any public deposition of the data at … making publicly available use-restricted data. … Read about our policy on research data and analysis products …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… should be coming out on the first Thursday of the month, just like I promised. Now I just have to make this whole … over our interview with Dr Elizabeth (or Betsy) Parkinson from Purdue University. She’s in the Department of Chemistry … Chemistry and Molecular Pharmacology there. We talked about several different pieces of her work, including …
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Natural Prodcast Episode 20: Brian Bachmann
Natural Prodcast. I’ve got two things I wanted to tell you about in this introduction. First and foremost, our … screening methods, genome mining in cave microbiomes, and using engineered biosynthetic pathways and enzyme systems to … organisms, in which case you get to go to exotic tropical locations and go snorkeling and scuba diving. And when my …
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Frequently Asked Questions: Project Management
Program.  … The majority of JGI projects come from the user community. Find out about JGI’s calls for proposals , and submit your proposal … project name, current status, NCBI & JGI taxonomy, and data locations on the various JGI Portals. The Sample report …
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Natural Prodcast Episode 23: Aaron Puri
… you guys. Schedules are hard. But, I’m working on it because I really do want you all to hear this great conversation … stuff with cool bacteria that I’m fascinated to learn more about. He works with methylotrophs, which are a group of … was like 2013 or 2014. And antiSMASH — I know you’ve interviewed Marnix [Medema] — was out there. And so I had this …
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Natural Prodcast Episode 19: Bill Fenical
… real legends of natural products, Professor Bill Fenical from Scripps Institution of Oceanography in San Diego. Bill … I learned a lot so much history from this conversation about why the ocean was basically unexplored until the 70s, … project,  so this is pretty comfortable territory for us, and I’m grateful to be working with him, and so happy we …
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User Programs
… and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.   Proposal Call FICUS CSP … 2025 August 2025 November 2025 March 2026 …   Learn more about our individual calls and other opportunities to work …
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Single Cell Research Group
Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic … such effort is targeted at environmental cells that are from candidate phyla, major branches in the phylogenetic … J. F., Hugenholtz P., Woyke T . Minimum information about a single amplified genome (MISAG) and a …
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Institutional User Agreements
Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … and delays on the work. The transfer of a proposal from one commercial institution to a new commercial …
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Workforce Development & Education Outreach
… to enter the STEM workforce by fostering an understanding of our role in advancing the energy and environmental genomics research frontier.  Learn more about the JGI's activities in this space.         Special … with Biotech Partners to host students transitioning from high school to community college. … University of …
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with … are crucial for advancing the bioeconomy, environmental sustainability, and improving bioenergy crops. … The … mass spectrometry-based methods to analyze metabolites from a wide range of biological and environmental samples — …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… the visit of an esteemed interdisciplinary delegation from the University of Duisburg-Essen (UDE), Germany with … UDE familiarized themselves with the research programs and user facilities at Berkeley Lab. Commenting on the visit, JGI Director Nigel Mouncey expressed enthusiasm about the potential of this collaboration stating, “We …
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