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Viral community analysis in a marine oxygen minimum zone indicates increased potential for viral manipulation of microbial physiological state
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Correlation-based network analysis combined with machine learning techniques highlight the role of the GABA shunt in Brachypodium sylvaticum freezing tolerance
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Multilevel analysis between Physcomitrium patens and Mortierellaceae endophytes explores potential long‐standing interaction among land plants and fungi
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Functional analysis of Salix purpurea genes support roles for ARR17 and GATA15 as master regulators of sex determination
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Atif Shahab
… streamlines project management, laboratory information tracking, and enables efficient analysis and reporting of sequencing projects and their … Information Management Systems (LIMS), bioinformatics, and genomics data management. He has worked at several renowned …
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JGI announces final round of 2022 Functional Genomics awardees
… year, the JGI accepts proposals for state-of-the-art functional genomics research from potential users who need help … into biological function. Through our CSP Functional Genomics call , we look for projects that will leverage the …
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Matt Blow
… Blow joined the JGI in 2009, and currently heads the Genome Analysis group. In this role he supervises the Genome Assembly, QA/QC, and User Support Analysis teams. Together, these teams provide analysis support and R&D for production and user science. He received his Ph.D. from the Wellcome …
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Webinar: PhycoCosm Tutorial
… about JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Why … me at [email protected] 5.  Q: If we have RNAseq or proteome data that is based on a model that is not based on a …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden understanding of … terpenes play key roles in plant growth, defense, and environmental interactions. Terpenes are also economically … also thrive in areas that receive a lot of rain.  Previous analysis of the E. grandis reference genome, an …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… industry standards.  A year later, her team used proteomics, genomics and transcriptomics to discover another advantage … for anaerobic fungi . Eventually, it’s possible that fungal communities — or enzymes from fungal communities — …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… DNA for genome sequencing was no easy task. The traditional way of collecting them is through a method called … the bridge to help scientists and researchers achieve their analysis goals. Offering this tool establishes the JGI as a … involves taking a single cell and isolating it for analysis. Once it’s alone, the cell breaks apart and its DNA …
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Triggering Morel Fruiting
… in China and involving Francis Martin from the Institut National de la Recherche Agronomique (INRA) in France and Igor … an external source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic … and biochemical processes driving the fruiting of soil saprotrophic mushrooms. To date, how the nutritional …
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