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Microbial Genomics & Metagenomics (MGM) Workshop
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on Microbial Genomics … mgm.jgi.doe.gov   This highly hands-on workshop is designed to familiarize users with the Integrated Microbial Genomes & … data. IMG/M is a web-based platform that provides access to the wealth of public microbiome sequence data and enables …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… researchers described how the viruses repeatedly attempted to infect and destroy the host archaea – and how the  … The battle waged below the Earth’s surface is reconstructed by combining a study of microbial communities … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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The Mobilome in the Mire
… and new analysis methods are bringing this mobilome into light, and opening up new options for engineering these … Bagby (Case Western Reserve University) and Simon Roux (JGI) as they talk about their recent work on a time series from Sweden’s Stordalen Mire. …
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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to … by most living creatures for energy, growth and reproduction—most organisms produce a set of "secondary … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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An Automated Tool for Assessing Virus Data Quality
… uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced “Check-Vee”) to help researchers assess and improve the quality of … The microbes that play key roles in cycling nutrients such as carbon, nitrogen and sulfur are themselves regulated …
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The fungus that made itself at home
… Retracing how the dry rot Serpula lacrymans adapted to a new ecological habitat. The Science By comparing … on why the dry rot ( Serpula lacrymans ) is so destructive in houses. A study involving six brown rot fungi … from Europe, that was sequenced and analyzed by the JGI. The researchers found that S. lacrymans var. lacrymans …
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its reproductive machinery The Science To better understand how … and experimented with the fungi and bacteria, while the DOE JGI team sequenced and annotated a host genome (Rm ATCC … and the National Institutes of Health. The work conducted by the U.S. Department of Energy Joint Genome …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… of infecting different host species? Or, do they tend to specialize, infecting just a single host? Another wrinkle … affect their prey in different ways. They have the capacity to kill outright, replicating so thoroughly that they lyse … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… Scientists have discovered that the candidate bioenergy feedstock switchgrass has adapted to expand its habitat range. … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered … and as a feedstock for biomass-based biofuel production. As seen with many commonly cultivated commercial …
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W. Berkeley Kauffman
… of new applications utilizing a variety of technologies to improve the JGI’s capabilities in the areas of metagenomics, …
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Neha Varghese
… Neha’s key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user …
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Atif Shahab
… led the development of an integrated platform for tracking JGI's sequencing projects and data warehousing. This platform streamlines project management, laboratory information tracking, and enables efficient analysis … their status. Mr. Shahab has extensive experience in Laboratory Information Management Systems (LIMS), bioinformatics, …
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