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… invaluable scientific and technical experiences.  Genomic data scientist Deanna Beatty sat down with interns hosted at … hi everyone. My name is Deanna Beatty, and I'm a genomic data scientist here at the JGI, and really happy to be here … Jacobs. I'm a rising sophomore at UC Berkeley studying data science. I’m here at the Lab with the SEED scholars at …

… trillion. Last year, the JGI surpassed three Petabases of data sequenced — that’s three-quadrillion base pairs of DNA sequence! To meet this “ data tsunami ,” as Kathy Yelick of the Computing Sciences … They may also provide a basic understanding of the roles microbiomes play in determining the behavior of the physical …

… I got to work with an enormous set of fungal genomics data. For me, it was an opportunity to adapt my existing … a STEM career, particularly one that incorporates big data. A large part of my project this summer was utilizing a … and harness them to unlock statistical patterns in big data. …

… and analyze the single nuclei and spatial transcriptomics data this work leverages.   These experiments focused on two … hair. At such resolution, this spatial transcriptomics data captured molecular information from both plant cells … in addition to associated plant genes.  All together, these data offer a granular view of both plant and fungal activity …

… deep dives into genomics, computational tools, and big data.  …

… it makes its sequencing, synthesis, metabolomics and data analyses capabilities available on a peer-reviewed … a limit to identify molecules exchanged between plants and microbiomes during interactions? Is it reliable performing … being used to integrate the metabolomics and transcriptomic data? A:  We use MAGI. Reference: Erbiligin et al.  MAGI: A …

… that supports “an unprecedented assembly of environmental microbiomes.” JGI’s Chief Informatics Officer  Kjiersten … results this year by assembling a collection of large datasets that will enable scientists to explore and collect data in new ways,” she said. “We’re excited to be able to …

… helpfulness and patience of my JGI PIs, having lots of data to play around with.” …

… switchgrass genome sequence is available on the JGI plant data portal Phytozome. The combination of field data and genetic information has allowed the research team … Plant Dataset …

… ecosystem,” said Salamov, one of Wint’s mentors and a data scientist at the JGI. Previous studies were conducted … the research question and applied it to such a large data set, but also went all the way through to convert her … to learning about how to navigate and analyze large genomic datasets during the internship, Wint also began learning …