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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm … big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights the vast array of functional … a novel approach to better understand microbial communities by looking at protein function within them. The work was led …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of California, Berkeley … Laboratory under US Department of Energy Contract DE-AC02-05CH11231, a Joint Genome Institute Community Science …
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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global lineages . Come harvest time, the cotton fields look like … field, growers can easily distinguish the cotton species by traits such as flower color, plant height, or fiber … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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Nikos Kyrpides
Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the … Schulz F, et al. 2020. Giant virus diversity and host interactions through global metagenomics. Nature . … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Thomson Reuters …
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Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228PT)
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Refining the Process of Identifying Algae Biotechnology Candidates
… to summary above^ as well ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly … cook knows, recipes can be refined for best results, often by starting with identifying the right ingredients. … algal genome and analyzed its metabolome to understand the metabolic processes involved in responding to various …
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The Power of One, Amplified
A preview of how large-scale single cell genomics complements metagenomics studies. The … the value of conducting large-scale single cell genomics by collecting nearly 500 single cells from a single low … of friends, while another might exhibit few limitations to interactions and new connections, thus sharing more ideas, …
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Evolution of a Fungal Gene Expression Regulator
Describing the largest analysis to date of the modified DNA base … date, involving more than 500 species of fungi. The Impact Interactions between plants and fungi run the gamut from … (epigenome).  In  Nature Ecology & Evolution , a team led by Robert Schmitz at the University of Georgia and including …
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The Case for Conservation
How sex chromosomes “older than dinosaurs” could help improve crop yields.  The Science The … heavy metal contamination, and drought. The moss genomes’ metabolic pathways could lead to the discovery of genes that … In a recent Scientific Advances article , a team led by McDaniel and his former graduate student Sarah Carey, now …
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Scaling Up Existing Skill Sets
Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI … opportunities in fields ranging from plant-microbe interactions to functional genomics. Hear from five of the Summer 2019 interns, who briefly shared their experiences below. …
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Access to Rock Star Scientists
Through the JGI-UC Merced Genomics Internship, graduate students Candace Cole, Mo Kaze, Akshay … : Ben Cole & Axel Visel, Genomics of Plant-Microbial Interactions “The summer internship has further confirmed by desire to pursue a STEM career, specifically in a …
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JGI Launches Latest Strategic Plan
For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one “petabase” – a … parallel with the intricate move preparations, the JGI has released its newest 5-Year Strategic Plan: Beyond Basepairs … effort (pages 37-39) and the launching of a Secondary Metabolites research group (pages 47-49). “Our hope is to …
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