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Virus Discoveries that Keep Getting Bigger
… quickly accelerated understanding of giant viruses. The Science In the last thirty years, in environments all over … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … makeup of new giant viruses. This review highlights four of these approaches. One way of detecting giant viruses …
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Promoting the Power of Viral Metagenomics
… summarizing the field of viral metagenomics, authored by JGI researchers Lee Call,  Stephen Nayfach and  Nikos Kyrpides , was  recently published in the journal  Annual Review of Biomedical Data Science . The following guest piece was written by Call, a … working to address some of the most pressing challenges of our time. For more information, please visit  …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… viral genome found in the deep subsurface ecosystem. The Science Altiarchaea are carbon-fixing microbes and targets … releasing fresh organic carbon which can serve as a food source for other microbes into the environment. Summary In J. … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Tanja Woyke Elected to American Academy of Microbiology
… Genomics and Systems Biology Division of the Lab’s Biosciences Area since 2018. Woyke also holds appointments as … honor,” said Axel Visel , JGI Deputy for Science Programs. “It clearly speaks to the enormous impact her … Woyke’s caliber support the JGI User community in accessing our resources and help them to push the boundaries of energy …
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Improving the Cacao Genome and Phytozome
… by the plant team at the  HudsonAlpha Institute for Biotechnology . An updated reference genome for  T. cacao has … for comparative purposes on the latest version of the JGI plant portal Phytozome at  phytozome-next.JGI.doe.gov . One of the goals in updating the genome …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… at the DOE Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National … in developing and managing public viral genomics resources such as analytical tools and data repositories to two … of metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile …
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Inaugural Critical Minerals & Materials Joint Research Portfolio Announced
… 20 proposals were selected by the Joint Genome Institute (JGI) and the Molecular Foundry (TMF) for their collaborative … of research proposals integrates genomics with nanoscale science, all aimed at accelerating discoveries and … leading approved proposals with free access to their resources and capabilities to advance their DOE …
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Accelerating Metagenomics Discoveries with Deep Learning
… recognition: for example, a camera’s ability to recognize your face and distinguish it from your friend’s. Biologists … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … in proteins that low sequence identity may belie. The technology he’s using is magical; transform any length of …
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Synthetic Biology Informatics Group
… develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative software … and associated tools, which track samples through the JGI’s Synthetic Biology pipeline as well as provide process …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered that the candidate … evolutionary consequences. A previous study conducted by our research team surveying the genomic and phenotypic …
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Evolution of a Fungal Gene Expression Regulator
… date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a genome sequence can … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and others like it, are uncovering … no. DE-AC02-05CH11231. The Georgia Advanced Computing Resource Center (GACRC) and Georgia Genomics and Bioinformatics …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Laboratory (Berkeley Lab) through the JGI Community Science Program (CSP) .  Through this collaboration, in … working to address some of the most pressing challenges of our time. For more information, please visit  …
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