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… Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been … microbes of that lake for over 20 years, to understand how the freshwater ecosystem works.  So a few years ago, when … to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes are the …

…   For years, researchers have known that many datasets miss a key part of microbial genomes: … the mobile genetic elements, or MGEs, that can move between organisms. But now, deep sequencing and new analysis … Bagby (Case Western Reserve University) and Simon Roux (JGI) as they talk about their recent work on a time series …

… This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge National … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …

… Populations of Antarctic lake microbial communities change with the seasons. The Science Light-harvesting bacteria … Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… A workflow for capturing the genetic make-up of specific … overcome this hurdle, a team led by Bernhard Fuchs and his postdoctoral researcher Anissa Grieb at the MPI for Marine … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… of mSystems , scientists found that adding salt to the growth medium caused Streptomyces coelicolor to activate … of multiple omics data from various environments — that JGI users can leverage to create a more complete picture of … with the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at …

… JGI researchers demonstrate how their laboratory and data science efforts support users, … discoveries. (Pictured from left to right: Peng Wang, Sravanthi Tejomurthula, Mi Yan, Deanna Beatty)    … in studies of complex biological and environmental systems. We optimize our service to the community through responsibly …

… Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants interpret different light cues … Software …

… mix-and-match characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … for computational analysis of the AT enzyme family, the JGI provided DNA synthesis capabilities to enable functional …

… A preview of how large-scale single cell genomics complements … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … was performed by Danielle Goudeau and Rex Malmstrom of the JGI’s Microscale Applications group . Cells were randomly …

… New evidence shows anaerobic fungi can degrade the hardiest of … Research Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential genes responsible for lignin deconstruction. (The JGI also conducted RNA sequencing and alignment to the …

… Novel archaeal lineage found in Yellowstone may have been important in early Earth conditions. … into the evolution of life on Earth. For decades, longtime JGI collaborator Bill Inskeep of Montana State University … (gene expression), and direct microscopy. Through the JGI’s Community Science Program , the team used metagenome …