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Better Living Through Bioenergy
… research at the Joint BioEnergy Institute (JBEI) , a JGI partner and one of the four US Department of Energy …
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Microbial Genomics & Metagenomics (MGM) Workshop
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on Microbial Genomics and Metagenomics. Details: mgm.jgi.doe.gov   This highly hands-on workshop is designed to …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … 150 archaeal viruses had been previously identified. The JGI researchers surveyed publicly available data in the … in the samples that corresponded to eight separate groups of viruses. To visualize one particular viral genome in …
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You Can Move, But You Can’t Hide
… Researchers at the JGI develop a tool to quickly and accurately identify mobile … called geNomad identifies and classifies MGEs based upon their gene content and their genetic sequences. The … of new viruses and plasmids quickly, even in massive datasets. geNomad employs two distinct approaches to identify …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… Back in 2011, JGI-supported researchers published a paper in the journal … Associate Professor Matthias Hess, also the chair of the JGI User Executive Committee, on how that study went from …
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2025 Progress Report
… JGI researchers demonstrate how their laboratory and data science efforts support users, advance foundational science and enable … U.S. Department of Energy Office of Science user facility supported by the Biological and Environmental Research …
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Finding the Fermenters
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Research (BER) program to enable scientific discovery in support of the DOE mission. Fermentative metabolism occurs in … Fermentation Explorer ( GitHub ) with a series of large datasets. One test was to predict traits of more than 400 …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… lineage of archaea with at least two major subgroups dubbed Marsarchaeota. The Impact Iron cycling is thought … into the evolution of life on Earth. For decades, longtime JGI collaborator Bill Inskeep of Montana State University … (gene expression), and direct microscopy. Through the JGI’s Community Science Program , the team used metagenome …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory. The JGI sequenced the shrub willows through the  Community … This work was supported by the NSF Dimensions of Biodiversity Program …
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How Maize Makes An Antibiotic Cocktail
… called terpenoids, which have a structure belonging to a group of chemicals called terpenes. Terpenes are important in … as  Sorghum bicolor — a  candidate bioenergy feedstock and  JGI Flagship Plant — could produce at least 15 zealexins. … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  …
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Ancient Algae Reveal Secrets of Plant Evolution
… early plants transitioned from water to land. Key gene groups involved in stress tolerance and multicellularity … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … The algal genomes sequences are available on the JGI’s  PhycoCosm portal. …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… moved to a lower-salinity environment with how a control group responded when moved to an environment of comparable … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … ( The annotated algal genome is available on the JGI’s PhycoCosm data portal.) This research not only sheds …
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