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T-Toxin Virulence Genes: Unconnected Dots in a Sea of Repeats
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DAP-seq Drives Robust Mapping of Gene Regulation
… plant lineages. Aligning with U.S. Department of Energy (DOE) interests, this advancement holds the potential to … Implementation Lead at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence …
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Micro-Scale Applications Group
… The JGI uniquely offers the first quantitative Stable Isotope … The JGI provides users access to cutting-edge cell sorting, DNA … additional functional insights into microbial genomes, the JGI now uses laser microdissection to selectively isolate …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… and Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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All Events
… The JGI is represented at conferences year round; find out where …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome … and bioinformatics annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled capabilities for science.  Dr. … in bacteria. Proceedings of the National Academy of Sciences of the United States of America 109(3), 805–810 …
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Virus-Microbe Interactions of Mud Island Mangroves
… his dissertation. Some of his research was conducted at the JGI through the DOE Office of Science Graduate Student Research (SCGSR) program , which …
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Access to Rock Star Scientists
… Through the JGI-UC Merced Genomics Internship, graduate students Candace … of the internship program. Candace Cole, UC Merced JGI Mentors : Ben Cole & Axel Visel, Genomics of … lab. My favorite thing is the mentorship provided by JGI. Everyone at JGI is so nice and helpful.”     Mo Kaze, …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected … management best practices that have advanced the microbial sciences. The Prize also recognizes innovative and impactful …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, … the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… intern summer has closed at the U.S. Department of Energy (DOE) Joint Genome Institute, a DOE Office of Science User Facility. This year, the 12th JGI-UC Merced cohort consisted of three undergraduate …
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome … and Metagenomes Program since 2011. Prior to joining the DOE Joint Genome Institute, Dr. Kyrpides led the development … on Microbiome Research with an emphasis on Microbiome Data Science. His group is developing novel methods for enabling …
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