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The Earth BioGenome Project 2020: Starting the clock
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists …
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Emiley Eloe-Fadrosh
… standards. Nat Microbiol . 8(5):751-753. Nayfach A, et al. 2021. A genomic catalogue of Earth’s microbiomes. Biotechnol … Roux S, et al. 2019. Cryptic inoviruses are pervasive in bacteria and archaea across Earth’s biomes. Nature … (MISAG) and a metagenome- assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnol. 35, 725-731. …
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Building Wet and Dry Lab Skills
… Vogel from the Plant Functional Genomics Group to study the effects of  Brachypodium distachyon plant root exudates on …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… from the full announcement “ Berkeley Lab Receives Multiple 2021 HPCwire Awards ” on the Berkeley Lab Computing Sciences …
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Meeting report: International soil virus conference 2024
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Frederik Schulz
… Group. His research is focussed on the discovery of novel bacterial, archaeal and eukaryotic microbes and viruses in … and complex life. Science . 376: 1453-1458 Nayfach et al. (2021) A genomic catalog of Earth’s microbiomes. Nature … 29–37. Schulz et al. (2017) Towards a balanced view of the bacterial tree of life. Microbiome. 5 (1), 1-6 Google Scholar …
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Soil virus offers insight into maintaining microorganisms
… viruses are a reservoir of genetic diversity and capable of transferring genes from one host microbe to another, which … distinct from similar proteins found in archaea, fungi or bacteria. Certain similarities with bacterial counterparts suggest the viral versions of the …
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Promoting the Power of Viral Metagenomics
… that infect organisms much smaller than humans, like bacteria, this power is not surprising at all.  In fact, … For example, viruses which infect the photosynthetic cyanobacteria found throughout the planet’s oceans can exert …
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JGIota: Looking Back at Methane-Making Microbes
… Those emissions mainly come from gut microbes — the bacteria and archaea breaking down plant matter. So since …
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New and Improved: Eucalyptus Reference is Now Accessible
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… like plasmids, the picture is far from complete.  In 2021 , scientists at St. Jude Children’s Research Hospital … with the JGI. Working together, they found most bacterial genomes from water and soil communities were at …
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