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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… Webinar held November 5, 2020 (watch the  video below, captions are available) spotlighted the metabolomic analysis … Q: Can you give us an idea about the scale of an average study? How many samples are typically involved? How long … Data Analysis – Tips from Users page.  Q:  Is the metabolic study able to build a profile for a not very well studied …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… strategic plan outlines how the JGI will advance the bioeconomy, leveraging partnerships to advance foundational science, creating opportunities for the global research … the DOE Office of Science user facility with broader national efforts to promote and stimulate a bioeconomy, where …
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Sequencing the fungal tree of life
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A new view of the tree of life
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… To boost crops more efficiently in the future, the evolutionary past may hold key insights. The way that plants … Facility located at Berkeley Lab. In addition to providing metagenome mining for computational analysis of the AT … around, regardless of malfunction or misplacement.  In studying this family of ATs, researchers found that these …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers have new … has some amazing resources and people — not just the instrumentation — but the experts we were able to work with on … of Science User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Tracking the Origins of Methane-Producing Microbes
… Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over half the total … were then sequenced separately. From these samples, 111 metagenome-assembled genomes (MAGs) were recovered, most of … is typically observed, but to the “TACK” superphylum,” said study first author Bojk Berghuis. “This provided us with …
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Soil virus offers insight into maintaining microorganisms
… researchers have identified a virus protein tied to carbon cycling.  The Science Through a collaborative effort, … The Impact The specific protein described in  a recent study in  Nature Communications , a chitosanase, is tied to … within soil. So, the chitosanase protein identified in the study is essentially chewing food to help  microorganisms …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA … and metabolism, work on which she is expanding with her study of microbes in California’s manmade water transport … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky Way, … categories: Catalog the human virome; Develop tools to study the human virome; Explore how the human virome … CheckV , which assesses the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… hitchhikers. These organisms are abundant and yet exceptionally small, with mini genomes to match. As a result, they … but these symbiotic interactions are difficult to study in the lab. Metagenomics provides new views of these … the microorganisms had a close relationship. Then, using metagenomes and metatranscriptomes generated by the U.S. …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven … Impact This dataset gives researchers a new foundation for studying how fungi produce and manage energy at the cellular … First, they scanned over 26,000 publicly available metagenomes in the JGI's IMG portal for mitochondrial …
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