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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected … for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the … year in Berkeley, Calif. Convening the “viral ecogenomics” community, the VEGA symposium provides networking …
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Training the Next Generation of Talent
New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced Days after presenting the results of his … JGI researcher, Zhong Wang, have adjunct faculty positions with the SNS, and Wang’s group was hosting another QSB … JGI Director Eddy Rubin. “QSB faculty are active DOE JGI Community Science Program collaborators, and UC Merced has …
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David Goodstein
With a background in experimental and computational surface … equipment manufacturer KLA-Tencor before joining the JGI in 2002. Initially focused on building tools to … the JGI's direct collaborators and the wider plant science community. Dr. Goodstein’s group also develops and maintains …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… of the cereal crop’s genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are … and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the mechanisms through which sorghum is equipped to deal with adverse environmental conditions, researchers hope to …
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … approaches to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of community-building efforts in the field of viral …
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A Plant Root Atlas for Tracking Developmental Trajectories
… 100,000 single root cells and combining the information with previously published datasets. The work was  recently … published in the journal  Developmental Cell and provides a community resource that could help researchers track cell … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… genes drive resilience when salinity fluctuates. The Science The Arctic microalga Plocamiomonas psychrophila can … of quantity and thickness. Replacing older, thicker ice with younger, thinner ice means more fresh water — and less … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Trent Northen
Berkeley Lab in 2008, Dr. Northen has had leadership roles within large DOE-funded research programs using mass … the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic … ecosystems (EcoFABs). … Trent Northen is the Metabolomics Science Program Head at the JGI. Click to learn more about …
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An Automated Tool for Assessing Virus Data Quality
… uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … to recover the genomes of these viruses and associate them with their microbial hosts. However, assembling viral … the completeness of these sequences and complements a community effort to develop guidelines and best practices …
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Viruses Reprogram Cells into Different Virocells
… infected by viruses undergo metabolic reprogramming. The Science If it looks like a duck and quacks like a duck, so … outcomes of these infections can affect the interactions within their ecosystems. Summary Microbes drive the energy … U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Dan Rokhsar
… directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of … over fifty plant and animal genomes. He currently leads the JGI’s Computational Genomics group, and is past lead of the Eukaryotic Genome Program (2010-2019), and JGI Chief Informatics Officer …
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Igor Grigoriev
… genomes, from protists to plants. In 2009, he launched the JGI Fungal Genomics program which resulted in over 2500 … genomics workshops. … Igor Grigoriev is the Fungal & Algal Science Program Head at the JGI. Click to learn more about … Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants.  Science, 2011; 332: …
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