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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … information as well as of important descriptive metadata about each strain. “This has been a very fruitful …
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JGI announces 2025 Functional Genomics awardees
… from left: [Above] Hao Chen, Matthew Cope-Arguello, Theophilus Olufemi Isimikalu, Todd H. Oakley, BJ Philmus and Aaron M. Roshotte; [Below] Paul Scesa, Kathleen … of Energy's Biological and Environmental Research (BER) program, these projects integrate cutting-edge genomic data …
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A programmable droplet-based microfluidic device applied to multiparameter analysis of single microbes and microbial communities
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DAS Tool for Genome Reconstruction from Metagenomes
… Science Through the JGI’s Emerging Technologies Opportunity Program (ETOP) , researchers have developed and improved … The work aligns with the ETOP mission of providing JGI users with the most current technology and expertise in …
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JGI Early Career Researchers Featured in mSystems Special Issue
… Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more targeted … method of traditional shotgun metagenomics. One approach uses fluorescence-activated cell sorting (FACS) to sort … Laboratory (Berkeley Lab). JGI is a DOE Office of Science user facility at Berkeley Lab.   …
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Mining Metagenomes for Cas Proteins
… The Science Researchers report the discovery of miniature Clustered Regularly Interspaced Short Palindromic Repeats … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. The sequences were then … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA … genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More recently, these … requires ~ 1.5-10 ㎍. Low-input protocols are continuously improved, but currently require input in the ~ 30 – …
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JGI Workshop at SIMB NP Meeting
… these untapped metabolic capabilities is often tedious and resource intensive. This is often due to, for … DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, has been developing and applying new genomics … that address these issues. Check the scientific program for relevant posters. …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … polar bears in winter scenes that came with crayons in various shades of white. To researchers searching for sequences … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… Studying the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but … To access the genomes of uncultured  microbes , scientists usually employ two different methods; shotgun metagenomic … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Silver age of GOLD introduces new features
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … scientific discoveries. GOLD’s  public Application Programming Interface allows users to access curated … (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the …
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The Expanding Universe of Methane Metabolisms in Archaea
… insights into an ancient metabolism. Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly available metagenome data … found on early Earth.”  Through the JGI Community Science Program, Inskeep and McKay recovered metagenome-assembled …
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