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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring … omics methods to examine microbial chemical production. The Science Soil bacteria in the genus Streptomyces are … complex compounds, but stay largely dormant under standard conditions. As described in a recent issue of mSystems , …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… recognize that crop varieties grow best in certain regions. Most plant species have adapted to their local environments; for example, crop and ornamental seeds sold for the … plant’s traits and genetic diversity,” said John Lovell, an evolutionary biologist at HudsonAlpha and first author of …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA … short audio production, we’ll hear from Karolina Heyduk, an evolutionary plant biologist at the University of Hawai’i at … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Taking Stock of the Known and Unknown Microbial Space
… of Science User Facility located at Lawrence Berkeley National Laboratory Berkeley Lab), have taken stock of the … the past three decades, their study assesses what fraction of the microbial diversity we know about, and proposes a … “While computationally derived MAGs have been a revolutionary tool for microbiology, it's a call to balance,” …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… Edward Lu and mentor Miguel Romero Sean Saki and mentors  Zhong Wang and Bryce Foster Sivagunalan Thamilarasan and mentors Zhong Wang and Bryce Foster Feng Yu and mentors Zhong Wang and Bryce Foster Irina Birskis Barros and mentors …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … therefore play a critical role in the global carbon cycle, and are of significant interest for their potential contributions to a sustainable bioeconomy, including, …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… Webinar held November 5, 2020 (watch the  video below, captions are available) spotlighted the metabolomic analysis … mass spectrometry-based measurements of primary and secondary metabolites from plants, microorganisms, and environmental samples using targeted and untargeted approaches. …
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Learning to Look
… expands inovirus diversity. To answer the question, “Where’s Waldo?” readers need to look for a number of … scarf, striped hat, round-rimmed glasses, or a cane, but only Waldo will have all of these features. As described … are important from the standpoint of phage-bacterial coevolution and are also useful tools in CRISPR-Cas …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes do, how they work, and applying them to environmental and energy challenges. But not all scientists have … of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), comes in. The JGI is …
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A Sorghum Pangenome Opens More Doors to Discovery
… holds keys to drought and flood resilience, biomass production for fuels, and growth in poor soils. In addition to bolstering sorghum fields, understanding this plant … crops for biofuels and bioproducts. Historically, work on sorghum has focused on producing high-quality reference …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and function. If a tree falls in the forest — whether or not anyone … of Science User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… For the last 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s vigilant … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy generation and environmental …
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