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JGI & KBase at PAG XXVII
… information to BER-funded activities of plant systems that make use of these resources will present on their work. …
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Introducing New Members of the JGI User Executive Committee
… providing input and advice on JGI policies and practices that affect users and their access to technical capabilities …
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Promoting the Power of Viral Metagenomics
… the world have been forced to confront the awesome power that viruses have to affect nearly every aspect of our daily lives.  But for researchers who study viruses that infect organisms much smaller than humans, like … high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… (KBase) , a free, open source data science platform that allows users to explore data and share reproducible … including hot springs and acid mining sites, traits that might have biotechnological applications.   Among the … three groups: cyanophages, bacteriophages, and giant algal viruses.  The approved proposals started October 1, 2020 and …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… ocean simply signals we’re near the beach. For bacteria, that salty, slightly stinky air is a rich source of the … need to grow and divide. Similar to the bacterial enzymes that fix nitrogen — nitrogenases — other enzymatic machinery … . Their work in Nature Catalysis details an enzyme system that was previously only understood at a genetic level. …
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Pinning Down a Piece of Photosynthesis
… of these moving parts are proteins — amino acid structures that harvest light, transport molecules and regulate … and national user facilities, researchers found that this protein detects iron and fine-tunes energy … “The protein we studied is a very interesting regulator that can make the link between photosynthesis, respiration …
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses with double-stranded … high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these …
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Supporting Global Research into Actinomycetes
… as a member of  its Secondary Metabolites research group . That group, led by JGI Director Nigel Mouncey, has launched … continued. “… There are still so many chemical compounds that have not been discovered that can be produced as secondary metabolites by … high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… Q: In her presentation, Michelle O’Malley said that having constant conversations helped with the proposal … and JGI staff to help you appropriately scope a proposal that will be competitive. Q:  Can you elaborate on the … high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these …
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A Community Resource for Secondary Metabolite Researchers
… a set of "secondary metabolites," chemical compounds that often confer specialized capabilities that allow the organisms to adapt to and control their … This comprehensive public repository of BGC sequences that come pre-annotated using multiple commonly used …
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Introducing New Members of the JGI User Executive Committee
… his interest in giving a voice to JGI users who feel that certain data sharing policies fail to represent the … “Large sections of the community are either unaware that [public but use-restricted] exist on [the JGI data … analyzed use-restricted data without contacting the lab that generated that data,” he said in his candidate …
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Cataloging the Microbes that Manage the Health of River Systems
… first publicly available, river-focused microbial resource that provides information at multiple scales from genes to … health is heavily reliant on the energy and nutrient flows that the microbes in these bodies of water help regulate. … interact with compounds like fertilizers and microplastics that might be added to the water along the way, impacting …
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