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… A preview of how large-scale single cell genomics complements metagenomics studies. The Science … cells harbored mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… O., Northen, T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and metabolite atlases. … algorithm for metabolite identification in metabolomics. Analytical chemistry, 86(19), 9496–9503. Louie, K., …

… to convert food into energy. However, in environments with little or no oxygen, life had found other ways to … compiled a list of with more than 8,300 organisms from multiple sources, including the U.S. Department of Energy … and function of these two isolates. The combined taxonomic and functional annotations were used to predict the …

… anaerobic fungi could be used to effectively modify lignin without oxygen and make use of it, it would change the … Research Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential … to diagnose electronic structure and functionality on the atomic level, was generated at JBEI and analyzed by the GLBRC. …

… uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … to recover the genomes of these viruses and associate them with their microbial hosts. However, assembling viral … on one or both sides by genes from the host organism. With the virus-host boundary clearly defined using …

… and characterized a novel phylum-level lineage of archaea with at least two major subgroups dubbed Marsarchaeota. The … into the evolution of life on Earth. For decades, longtime JGI collaborator Bill Inskeep of Montana State University … lineages, the team relied on a combination of phylogenomic analyses, transcriptomics for microbial genomic …

… , employ the evolutionary strategy we are far more familiar with: differentiating into male and female sexes. For the … can distinguish males and females even when plants with multi-year generation times are young and haven’t physically … team found that the shrub willow’s W chromosome has palindromic structures, the first time seen in a plant sex …

… microbe, tucked in the fungus’ tissue. If you’re a Marvel Comics fan, you might liken the symbiotic relationship to … Photobiont and fungus (mycobiont) live intertwined, with the photobiont transferring part of its … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and …

… Plants that the zealexin pathway has an “hourglass” shape with diverse precursors in, and many different products out, … terpene synthases and cytochrome P450s — that catalyze multiple products, resulting in many antibiotics. To uncover … with zealexin synthesis. The researchers used proteomics to home in on precise biosynthetic enzymes elicited by …

… of quantity and thickness. Replacing older, thicker ice with younger, thinner ice means more fresh water — and less salt — near the surface where algae grow. Armed with a better understanding of the alga’s stress resistance … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… from different Antarctic lakes. To assess the genomic variation in haloarchaea, they also characterized … on Antarctica distinct and unique. In collaboration with the DOE Joint Genome Institute, a DOE Office of Science … applications. The work has been enabled through the JGI Community Science Program (CSP) . Cavicchioli and his …

… Meta-omics datasets show that CRISPR-Cas systems determine … some archaeal hosts and their hitchhikers. The Science Within the archaeal domain, there is a group of tiny … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …