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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… multiple omics methods to examine microbial chemical production. The Science Soil bacteria in the genus … Many of the metabolic switches identified are shared across hundreds of related species, meaning these insights … most of these gene clusters remain silent under standard laboratory conditions. Researchers with the Department of …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab) uncovered a broad diversity of … of uncultivated giant viruses from environmental sequences across the globe, then using these sequences to make … viruses in the various ecosystems, their diversity, their predicted metabolic features and putative hosts,” noted …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… Integrative Genomics Building at Lawrence Berkeley National Laboratory (Berkeley Lab) as well from across the globe via their laptops or even smartphones. This … Berkeley and Berkeley Lab, who discussed the exciting progress in gene editing made possible by CRISPR-Cas9; the …
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New Research Sheds Light on Diversity in the Deep Sea
… volcanoes,  researchers studied microbial communities across five oceanic regions. In doing so, they found a high … communities around these vents survive in very hot, high-pressure and chemically-rich ecosystems. This means they … of Science User Facility at Lawrence Berkeley National Laboratory, contributed metagenomic sequencing to the study …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… , researchers describe a strategy to recover high value products from human waste. They   genetically modified yeast … Foundry – both located at Lawrence Berkeley National Laboratory (Berkeley Lab.) The Impact Biomaterials are … innovations for bioproduction and advance their utility across the bioeconomy. Summary Wastewater treatment involves …
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Alabama A&M Interns Access An Abundance of Knowledge
… Institute and Alabama A&M University piloted an internship program to bring students to the JGI for research training … We have been working on creating transgenic plants with CRISPR Cas9 knockout mutants to observe and investigate how … and rhizosphere. Ti’Yanna Watson: I really hope to gain laboratory experience working with tools as well as …
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements … showed that the composition of the community was similar across sequencing approaches, that species specific sets of … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), employed single-cell sequencing …
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A Natural Mechanism Can Turbocharge Viral Evolution
… For a virus with a “head-tail” morphology, this means using proteins on its tail fibers to latch onto a specific target … a group of viruses that had in their genomes a surprising tool: a “diversity generating retroelement,” or DGR. … Science user facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), has looked for DGRs in a broad …
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The JGI Data Portal: Improving User Experience
… Portal is currently only accessible via Phytozome, the improvements it encompasses are more broadly applicable to the … work on IMG and GOLD,” said Steve Wilson, head of the JGI’s Systems Engineering Group. “Our team’s ultimate goal is to allow scientists to search for specific types of data across organisms, enabling them to conduct more complex types …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… less than 5% of land on Earth, peatlands store approximately one-third of the world’s soil carbon. The … majority of the ground cover in peatlands. These boggy ecosystems are acidic and have very little oxygen, which is … of Science User Facility at Lawrence Berkeley National Laboratory, and the HudsonAlpha Institute for Biotechnology …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… capability available through the  Community Science Program (CSP) . This includes mass spectrometry-based … Program , along with Jenny Mortimer, Director of Plant Systems Biology at the Joint BioEnergy Institute (JBEI). … more extreme in the field. By having transcriptomics data across 2 years, as well as a second field trial (which will …
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JGI Scientists Pen Genome Watch Articles
… Science User Facility located at Lawrence Berkeley National Laboratory, are sharing their expertise in environmental … an email in 2018.  Tanja Woyke , who leads the  Microbial Program at the JGI, received a message from Andrea Du Toit, … with the Wellcome Sanger Institute in the UK — a nonprofit that was founded to help sequence the human genome. …
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