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Evolution of a Fungal Gene Expression Regulator
… the largest analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in … 5mC is an important piece of how they regulate their genomes, but is not well understood in fungi. A team of … cytosine clusters (MCCs – similar to the MAC clusters for 6mA), rather than in genes, which suggests that 5mC may play …
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Mapping Heat Resistance in Yeasts
… A new approach for improving functional annotation in fungal genomes. The Science In … and improve functional annotation to harness the genomic data. Reported October 8, 2018, in Nature Genetics , a team …
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Webinar: SIP technologies at EMSL and JGI
… The Environmental Molecular Sciences Laboratory (EMSL) and the … with. 2. Q: What would a typical turnaround time be for data once samples are in hand at JGI? A: It takes a few … measure the 15N at the bulk level, if that helps at all.  6. Q:How would field applications of the rhizoboxes …
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JGI Launches Latest Strategic Plan
… end of 2018 was marked by a celebration of contributing over one “petabase” – a quadrillion nucleotide bases of DNA sequence to the public data repositories over its now 20-plus-year history. In 2019, the countdown has …
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Graduate Students Get Thesis Research Opportunity at the JGI
… latest call , a total of 70 graduate students from 52 universities were selected to carry out part of their thesis … central to Office of Science mission areas across the 6 Office of Science research programs. Among the recipients … to work with JGI virus researchers and harness the IMG/VR database. “The SCGSR award will further my goal of resolving …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… For the first time, a team has comprehensively described host-virus dynamics in a microbial mat. The … virus had been infecting the cell. The team assembled 130 genomes from their sample — a small proportion of the … and archaeal cells — and detected the virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome … lab informatics. Prior to joining JGI in late 2025, he served as Director of Scientific Computing at Predicine, an … Liu, O., Akiva, E., Eyles, T. H., Galm, U., Ganesh, S., Hendrix, S. L. …
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JGI announces 2024 Functional Genomics awardees
… Functional Genomics call , we look for projects that will leverage the JGI’s DNA synthesis and omics capabilities to … to use them for engineering applications in support of advancing the bioeconomy.  This year’s project goals range from improving crop productivity for bioenergy through enhanced …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… algae and secondary metabolites. A total of 27 proposals have been  approved through the annual  Community Science … resulting from 95 letters of intent. For the first time, 63 percent of the accepted proposals come from investigators … range of environments. A similar proposal focused on diatom genomes from  Thomas Mock of the University of East Anglia …
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Effects of sample treatments on genome recovery via single-cell genomics
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Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes
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Charting Progress toward Professional Goals
… their summer experiences at the JGI Berkeley Lab offers a variety of programs to help inspire and train the next … and work onsite with an experienced researcher who serves as their mentor. By contributing to projects that will … invaluable scientific and technical experiences.  Genomic data scientist Deanna Beatty sat down with interns hosted at …
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