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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… efficiency for users requiring multiple omics methods to examine microbial chemical production. The Science Soil bacteria in the genus Streptomyces are nature's chemical factories. They hold genetic … offers a template — integrative analysis of multiple omics data from various environments — that JGI users can leverage …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… What started with 2 interns in the summer of 2014 has grown to a total of 75 with the inclusion of the 2023 cohort. Each of … insights, thoughts, and explorations that has led to groundbreaking science and opportunities to speak on a …
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JGI Scientists Pen Genome Watch Articles
… Reviews Microbiology column last year — and there’s more to come in 2020. Researchers at the U.S. Department of … User Facility located at Lawrence Berkeley National Laboratory, are sharing their expertise in environmental genomics … metabolism . And postdoctoral researcher Sara Calhoun, data scientist Stephen Mondo, and  Fungal and Algal program …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… more about what they learned from working with their JGI mentors, what challenges they overcame, and what new skill sets they look forward to taking back to school.  The interns from this cohort and … I started this, uh, summer internship was working with big data, but something that I learned from this program was how …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… Scientists have discovered that the candidate bioenergy feedstock switchgrass has adapted to expand its habitat range. But at what cost?  A … by our new switchgrass manuscript , we plan to use existing data as well as generating additional genomic resources to …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… oust resident tiny algae. The cold polar oceans give rise to some of the largest food webs on Earth. And at their base are microscopic, photosynthetic algae. But human-induced climate change , a new … and stark the biogeographic boundary is between them. The data is somewhat beautiful in that regard,” said Andy Allen, …
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JGI-UC Merced Interns Share Their 2021 Experiences
… UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research projects, hone science … further along in their academic career enjoyed the chance to develop new skills needed for their PhD research. And for … Evolution of the Mitochondria Internship …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. … Changing an A, C, T or G in a genome sequence can lead to changes in protein structures and functions, but the DNA … of a modified DNA base is a methylation of the base cytosine at the 5th position on its carbon ring, or 5mC. In …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… Congratulations to Tanja Woyke, who has been awarded the van Niel … International Committee on Systematics of Prokaryotes. Due to the ongoing pandemic, Woyke will receive the prize at a … A senior scientist at Lawrence Berkeley National Laboratory (Berkeley Lab), Woyke currently serves as the interim …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… On July 30, UC Merced students and their JGI mentors toasted to the end of a nine-week virtual internship. The …
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Hiroshi Otani
… facilitate discovery of new secondary metabolites. Prior to joining the JGI, he studied transcriptional regulation, … in understanding how, when and why microbes decide to produce which metabolites. … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, …
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Leo Baumgart
… the DOE Joint Genome Institute in 2018, following his doctoral research in synthetic biology and microfluidics at the … operationalizing new genomic technologies, integrating automated liquid handling and bioinformatics pipelines to transition bench-scale methods into production workflows. …
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