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Root-associated bacterial communities and root metabolite composition are linked to nitrogen use efficiency in sorghum
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Graduate Students Get Thesis Research Opportunity at the JGI
… to an exceptional caliber of scientists.” For her project, “Microbial Community Structure and Methane Production in … JGI’s User Programs deputy and head of the Microbial Systems group. Tringe’s research group focuses on the roles … in wetland carbon cycling and the interactions of plants with their associated microbiomes. Tringe was also …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… event will bring together researchers across major ecosystems and disciplines who are developing and applying laboratory ecosystems to help transition microbiome science from largely … is inspired by the vision of standardized fabricated ecosystems (EcoFABs) designed for precise manipulation and …
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JGI Workshops at PAG
… of the wider genomics community. Jan. 13 workshop: BER Plant Genomic Science In this workshop, we will present … genomic sequence information to BER funded activities of plant systems. We will describe how to apply for a project with …
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An Integrated Dataset to Understand Ecosystem Interaction
… the dynamic relationship between poplar trees and their microbial partners. The Science To help better understand how ecosystems work and how healthy they are, a recent data set  … researchers came from two environments: natural forests and plantations managed through human intervention. By …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how genes … mapping this intricate network of regulatory “switches” in plants at a large scale was akin to trying to chart every … due to technical limitations and the sheer complexity of plant genomes. Now, with improvements to DNA Affinity …
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JGI Announces 2026 New Investigator Portfolio
… metatranscriptomics and genome assembly to investigate microbial and plant metabolism across diverse ecosystems — from Antarctic soils and Icelandic hydrothermal …
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Leo Baumgart
… of JGI user science projects spanning bacteria, fungi, and plants. His team is also developing single-nuclei sequencing … regulation at the level of individual cells across diverse plant tissues. Dr. Baumgart focuses on expanding functional … Graham, Ramon Huerta, Ryan Johnson, and Lev Tsimring. "Microbial microfluidic biosensor." U.S. Patent 11,209,412, …
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Phylogenomics reveals convergent evolution of red-violet coloration in land plants and the origins of the anthocyanin biosynthetic pathway
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PlantSEED enables automated annotation and reconstruction of plant primary metabolism with improved compartmentalization and comparative consistency
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De novo transcriptome assembly of drought tolerant CAM plants, Agave deserti and Agave tequilana
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