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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… is remarkably simple with only 7,500 genes, compared to 17,000 in the model alga Chlamydomonas . The genome is also compact at 22 megabases versus 120 MB in Chlamydomonas . With fewer redundant pathways and … under U.S. Department of Energy Contract No. DE-AC02-05CH11231. MAD was supported, in part, by the NIH T32 Genetics …
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iPHoP: A Matchmaker for Phages and their Hosts
… these different routes. To train the model, the team used 1,870 known virus-host pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the … Program awarded under UC-DOE Prime Contract DE-AC02-05CH11231. The work conducted by the U.S. Department of Energy …
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Fishing for Novel Cellulose Degraders
… User Facility, is supported under Contract No. DE-AC02-05CH11231. The work was supported by a JGI Director’s Science award. …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… a DOE Office of Science User Facility. This year, the 12th JGI-UC Merced cohort consisted of three undergraduate … students and eight graduate students, hosted by 18 JGI staff. One of the mentors, postdoc Yumary Vasquez, …
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JGI announces 2024 Functional Genomics awardees
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Building Wet and Dry Lab Skills
… the plants and extracting DNA. They also analyzed 16s amplicon data to determine microbiome composition. This …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… New research identifies sex chromosomes in the plant and illuminates the significant role sex plays in how the moss … The work (proposal no. 10.46936/10.25585/60001030) (A.J.S.) conducted by the US Department …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… (in this case, a plant’s complete genetic makeup) and 10 common gardens. We discovered that 8X populations have …
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Evolution of a Fungal Gene Expression Regulator
… least one reference genome for every family of fungi, the 1000 Fungal Genomes initiative of the U.S. Department of … the US Department of Energy under contract no. DE-AC02-05CH11231. The Georgia Advanced Computing Resource Center (GACRC) …
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JGI Accepts 17 Proposals for Community Science Program
… and how ecosystems are adapting to stresses. A total of 17 proposals have been approved through the annual Community … Lab). They were selected through peer review from 41 full proposals out of 50 letters of intent submitted. Many …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… dead cells recorded. Samples were taken again at two, six, 12 and 24 hours. By the 24-hour mark, these algae showed … Alliance of Canada-Compute Canada facilities. The work (10.46936/10.25585/60001017) conducted by the U.S. Department of …
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A Grass Model to Help Improve Giant Miscanthus
… and Environmental Research under Award Number DE-SC0018420. The work conducted by the U.S. Department of Energy … U.S. Department of Energy under Contract No. DE-AC02-05CH11231. The collection of the M. sinensis and M. … accessions and RAD-seq work was supported by EU FP7 KBBE.2011.3.1-02, grant number 289461 (GrassMargins) and the DOE …
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