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Soil virus offers insight into maintaining microorganisms
… soil health. Summary Soil viruses are a reservoir of genetic diversity and capable of transferring genes from one host microbe to another, which can have a … scientists can shed light on hidden components, including genes called auxiliary metabolic genes (AMGs) that have …
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Game On: High School Students Drive Everglades Metagenomics Study
… sampling in the Florida Everglades to help train the next generation of scientists. She shares her thoughts about the … analysis.  The class had to sift through over 55 billion genes and 16 trillion DNA bases of data, to figure out what … to look at the predominant taxa and the abundance of genes involved in environmentally significant metabolic …
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Doubling Down on Known Protein Families
… sequencing allows researchers to study the entire genetic makeup of these communities via whole genome … of the samples, without being able to distinguish which gene belongs to each individual microbial species within a … call “known knowns” — that is, they are similar to genes with known function. Others are called ‘known …
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JGI Workshops at 33rd Fungal Genetics Conference
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JGI Scientists Pen Genome Watch Articles
… and metagenome , rather than just by 16S ribosomal RNA gene censuses.  Emiley Eloe-Fadrosh ,  Metagenome Program … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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Cell by cell: population genetics in the wild
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Identification of mobile genetic elements with geNomad
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Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps
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A Complex Confection Decoded: Sugarcane Reference Genome
… in  Nature by an international consortium. With the genetic code of sugarcane, researchers were able to map the location of genes that provide resistance to the brown rust disease that … reference sugarcane  genome , the JGI provides foundational genetic information that crop breeders can use to improve …
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JGI & KBase at PAG XXVII
… Populus 8:03 PM Natural Diversity in  Setaria  and a Novel Gene for Shattering   In mid-2019, JGI and KBase will be …
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Genome-Wide Association Studies across Environmental and Genetic Contexts Reveal Complex Genetic Architecture of Symbiotic Extended Phenotypes
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Matt Blow
… University in 2005, where he studied RNA editing and cancer genetics. Dr. Blow carried out postdoctoral work at LBNL, … et al. 2021. Persistence and plasticity in bacterial gene regulation. Nature methods 18 (12), 1499-1505 Shulse et … et al 2018. Mutant phenotypes for thousands of bacterial genes of unknown function. Nature 557:503-509. Blow et al …
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