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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
A quick snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and …
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Back in the Lab: the 2023 Summer Intern Experience
This summer marked the first fully in-person internship experience in several years for students and researchers alike at the JGI. With the past few years upended by the pandemic, 2023 … gave interns the opportunity to be fully immersed in not only their work, but the opportunity to collaborate with and …
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PhycoCosm Tutorial
Learn more about PhycoCosm, the largest interactive collection of sequenced algal genomes, omics data and comparative … analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of Science user …
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I-Min (Amy) Chen
Ph.D. in Computer Science. Her research has been focused on semantic and object-oriented data modeling, and biological data management. She was one of the co-authors and key developers of the … currently the Microbiome Computational Resource Lead at the JGI, responsible for the data management infrastructure of …
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JGIota: Looking Back at Sequencing for Soybeans
… could boost biofuels and fertilize fields. So in 2010, the JGI helped publish the original genome sequence for the … have been able to look into soybean’s strengths – along with a fungus that threatens this important crop. Hear …
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The Fungi That Survive In Antarctica
They survive everywhere from Antarctica to Joshua Tree National Park, despite extremely harsh conditions. And their survival secrets could one day help … are working with scientists from around the world – and the JGI – to understand them better. …
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2023 Progress Report
Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
Puerto Nuevo is a small town along the Baja California coastline in Mexico. While … Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the … Associated Microbes and Parasites. Ul-Hasan credits her JGI-UC Merced summer internship for helping lay the …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
Back in 2011, JGI-supported researchers published a paper in the journal … State University campuses for biotechnology education as part of a course-based undergraduate resource … Associate Professor Matthias Hess, also the chair of the JGI User Executive Committee, on how that study went from …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at the … with the assembler program MetaHipMer2. Oak Ridge National Lab is home to two supercomputers — Summit and Frontier … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …
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River microbiomes from around the world: Kelly Wrighton
Kelly Wrighton and her group at Colorado State University in Fort …
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From Textbook to Real World Applications
When local students Maya Hanck of Carondelet High School and Tim Kostolansky of De La Salle High … biology, Robert Evans and Jan-Fang Cheng in the Functional Genomics group took it upon themselves to mentor them. …
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