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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… which affects a number of environments, including plants, soil, and the gut. To better understand the dynamics … and symbiotic bacterial interactions with animals and plants, or cause metal corrosion in oil pipes. Scientists … difficult to use inside deep tissues. Additionally, all plants, many bacterial cultures, and environmental samples …
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New and Improved: Eucalyptus Reference is Now Accessible
… are 900 species of eucalyptus. The trees are fast-growing plantation crops that supply wood and fiber for various … in South Africa. The South African team collected the plant tissues. DNA and RNA sequencing were conducted by the … E. grandis TAG0014 HAP1 and HAP2 genomes (2025 assemblies) …
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JGI Scientists Pen Genome Watch Articles
… latest article, published January 27, is about engineering plants and their microbiomes for more sustainable … researcher Sara Calhoun, data scientist Stephen Mondo, and  Fungal and Algal program lead Igor Grigoriev took readers on …
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A Sorghum Pangenome Opens More Doors to Discovery
… addition to bolstering sorghum fields, understanding this plant eventually offers avenues for translating its … shows only one slice of the adaptation possible for this plant. In other lines around the world, much more genetic … gene repertoire, and the phenotypic diversity across this plant in one accessible resource,” said John Lovell, a …
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Exploring the Diversity of the American Prairie’s Switchgrass
… A tall native plant of the North American prairie, switchgrass ( Panicum … of scientists made an ambitious plan to begin to link the plant’s varying traits — height, biomass, hardiness to cold, …
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Benjamin Cole
… Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants interpret different light cues by altering their growth program, and on how plants coordinate their gene expression with light and …
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Anuvia taps JGI for expertise to pinpoint products from beneficial soil microbes
… for a steadily growing worldwide population. Anuvia Plant Nutrients , a small Florida business producing bio-based plant nutrition products that target soil enrichment, is …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… the evolutionary past may hold key insights. The way that plants process nutrients has a rich back story — they rely … work was our focus on all the kingdoms, including animals, plants, bacteria, archaea and fungi. We thought this kind of … from each of six kingdoms: eubacteria, archaea, protist, plant, fungi and animal. This analysis led them to identify …
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A One-Stop Shop for Analyzing Algal Genomes
… metagenome datasets, MycoCosm for comparative analysis of fungal genomes, and Phytozome for comparing plant genomes. Kuo and Grigoriev encourage scientists to …
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The fungus that made itself at home
… the brown rot Serpula lacrymans towards breaking down plant mass for conversion to sustainable, alternative … and var. shastensis from North America – against a third fungal Serpula species, S. himantioides from Europe, that …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… fundamental aspects of fern biology and, more broadly, land plant evolution. Recent findings in Ceratopteris richardii … ancient gene transfers from bacteria have all armed the plant with an array of defense mechanisms. The Impact There … will illuminate the evolutionary history of a pivotal plant as well as the evolution of seed plants, the fern’s …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of … updates. Phytozome  v13, which now hosts upwards of 250 plant genomes and has been under active development for over …
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