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JGI@25: Cow Rumen and the Early Days of Metagenomics
… cow stomach. Rumen – and its microbes – are really a powerhouse. Rumen microbes have the ability to break down hardy … hold clues to how humans could do the same on an industrial scale to produce biofuels . Since one of the … expanded into three other universities. You can learn more about how JGI data supports higher education in this JGIota …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge National Lab is home to two … that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running smaller …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… achievements in science, technology, and diversity/inclusion by the annual  HPCwire Readers’ and Editors’ Choice … JGI, ESnet are U.S. Department of Energy Office of Science user facilities. The HPCwire Editors Choice Award for Best Use of HPC in Life Sciences went to the Berkeley Lab team …
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JGI Workshop at SIMB NP Meeting
… these untapped metabolic capabilities is often tedious and resource intensive. This is often due to, for example, tight regulation of biosynthetic gene clusters (BGCs) in native hosts, the complexity of cloning and … that address these issues. Check the scientific program for relevant posters. …
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JGI Workshops at PAG
… genomes, is rising. The purpose of this Workshop is to illustrate the expansion of this field and bring it to the … how to apply for a project with the JGI Community Science Program and how you can use the KBase system to accelerate your plant genomics …
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Ben Bowen
… in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and … supporting the DOE’s Biological and Environmental Research user community in their bioenergy and environmental … Achievement 2012 UC Berkeley, Leadership and Development Program Awardee 2005-2009: NIH K25 Mentored Career …
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Evolution of a Fungal Gene Expression Regulator
… the genome. Many plant pathogens such as the fungi that cause poplar leaf rust, are rich in transposons, which may help the pathogens … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and others like it, are uncovering the true … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office …
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JGI announces second round of 2023 New Investigator awardees
… with DOE missions and from PIs who have not led any previously-accepted proposals — through the New Investigator call under our Community Science Program .  Below find a list of the second round of …
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JGI@25: The Little Alga That Could
… production in other algae that may be more viable for sustainable biofuel production. The JGI published a partial … by Daniel Rokhsar, head of the JGI’s Computational Biology Program, along with JGI Computational Scientist Simon … been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference genome is cited …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… and applying these engineered ecosystems across various biological contexts. The program fosters intimate, dynamic interactions, offering an …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… microorganisms for biofuel production and other sustainable applications. Summary Hot springs are … A recent study published in  The ISME Journal     focused on a class within  Chloroflexota called  … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, has …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… the genetic codes of plants is often challenging because in many plants chromosomes are present in more than two … his words, the history of the strawberry is complicated because, “when you have comparisons to other closely related … an early algorithm and developing it in order to talk about the subgenome identity.”  These days, Session is …
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