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Omega: an Overlap-graph de novo Assembler for Metagenomics
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A metagenomic perspective on the microbial prokaryotic genome census
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Metagenome Sequencing to Explore Phylogenomics of Terrestrial Cyanobacteria
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Metagenomes in the Borderline Ecosystems of the Antarctic Cryptoendolithic Communities
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Extreme Scale De Novo Metagenome Assembly
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Metagenomic Sequencing of Two Salton Sea Microbiomes
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Computationally Classifying Fungal Lifestyles
… genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … of fungi, by lifestyles. The machine “learned” to identify data generated in part through the 1000 Fungal Genomes … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Nandita Nath
Nandita is involved in developing new methods to improve genome recovery from single cells and to build sequencing libraries from minimal DNA input without …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are abundant … identified. The JGI researchers surveyed publicly available data in the JGI’s  IMG/M database , information the Probst …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky Way, viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome …
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Three Join the JGI User Executive Committee
The JGI User Executive Committee (UEC) recently welcomed three new members earlier this month – Sneha Couvilion of Pacific Northwest National Laboratory, Chris Schadt of … Society of America and is also a National Microbiome Data Collaborative (NMDC) Champion. As an early career …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… with excitement and determination as they came onsite. From data carpentry to science communications, their schedules … Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth … Frederik Schulz, Structure Prediction to Annotate Novel Viruses: the Case of Polintoviruses Josue Duque and mentor …
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