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Building Sphagnum Genomic Resources
… These resources would provide the research community with the ability to address questions such as sphagnum’s associations with methane oxidizing bacteria, nutrient uptake, and its … recovering draft metagenome-assembled genomes for seven novel species of Acidobacteria through an approved CSP …
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2024 Progress Report
… April 2024 — through serving an increased number of users with a record output of products, making data easier to … number of primary users — 2,456 — had active proposals with us, along with more than 15,000 secondary users who … processed 13,700 metabolomics samples With our users, 247 publications were published   …
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Cultivating Symbiotic Antarctic Microbes
… of soil-sediment environments, water and air-atmosphere with the humans and the biosphere), including the global … genome sizes and their cells were not observed to associate with host cells. In the  Proceedings of the National Academy … images confirming the  Hrr. lacusprofundi  were directly transferring cytoplasmic content to Nanohaloarchaea. Using …
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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Mapping the Earth’s Hidden Fungal Kingdom
… written in a yet-to-be-deciphered language. Researchers with the Department of Energy (DOE) Joint Genome Institute … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … Moving toward 10,000 fungal genomes and beyond will yield novel enzymes and metabolites, enable prediction of fungal …
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JGI@25: The Little Alga That Could
… challenges. Chlamydomonas is a single-celled alga with a unique place in evolutionary history. Retaining … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … genome is cited in roughly 10% of all since-released publications on green algae. “The Chlamy genome launched …
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A Grass Model to Help Improve Giant Miscanthus
… Department of Energy (DOE) Bioenergy Research Center, along with researchers from the Energy Biosciences Institute, the … Center for Biotechnology. Most plants are diploids with two copies of each chromosome, one inherited from each … genes provided by these chromosomes can contribute to novel traits. M. sinensis is a tetraploid, with four sets of …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of … land and the atmosphere. Microbes living there can interact with chemical defenses of plants and influence nutrient … composition varied across both sites and host tree species, with geographic site exerting the stronger influence. …
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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with the seasons. The Science Light-harvesting bacteria … bacteria instead go through a boom and bust cycle aligned with light availability. A long-running time-series study … most months each year, Ace Lake is covered in thick ice, with a combination of marine and freshwater below. This …
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2022 Progress Report
… of the JGI is to provide the global research community with access to the most advanced integrative genome science …
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Webinar: PhycoCosm Tutorial
… not sequenced by JGI, if PIs are interested are working with us please contact me at [email protected] 5.  Q: If we have RNAseq or proteome data that is based on a model that is not based on a genome model with PhycoCosm, how do we go about getting it in your …
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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to the  International Cocoa … metric tons . The global chocolate brands couldn’t exist without cocoa.  But today the plant is under threat due to … of the world’s largest buyers of cocoa, is collaborating with others to develop healthier and more productive cacao …
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