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Igor Grigoriev
… genomes, from protists to plants. In 2009, he launched the JGI Fungal Genomics program which resulted in over 2500 … genomics workshops. … Igor Grigoriev is the Fungal & Algal Science Program Head at the JGI. Click to learn more about … et al (2021) PhycoCosm, a comparative algal genomics resource.  Nucleic Acids Res. 49(D1):D1004-D1011 Swift et al …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected … management best practices that have advanced the microbial sciences. The Prize also recognizes innovative and impactful analysis of microbiome data that has changed our understanding of the microbiome and the microbial …
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River microbiomes from around the world: Kelly Wrighton
… the world’s river microbiomes. And they’re using team science to do it.   …
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PhycoCosm Tutorial
… analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of Science user facility at Berkeley Lab. Presented by Igor Grigoriev, Alan Kuo, Sara Calhoun and …
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JGI-UC Merced Interns Share Their 2021 Experiences
… from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research projects, hone science presentation skills, and participate in professional … the Mitochondria Internship … Cross Species Integration of Single Cell Transcriptomes … Exploring and Visualizing P. …
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Virus-Microbe Interactions of Mud Island Mangroves
… this year, Ian Rambo, a graduate student in Brett Baker’s lab at the University of Texas at Austin, will defend his dissertation. Some of his research was conducted at the JGI through the DOE Office of Science Graduate Student Research (SCGSR) program , which …
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Ian Blaby
… biology and functional genomics. Prior to joining the JGI, he was a group lead at Brookhaven National Laboratory … oxidase for biophotovoltaic energy. Plant biotechnology journal . 14: 1, 22-28. 2016 Blaby et. al., Genome‐wide … Chlamydomonas genome project: a decade on. Trends in plant science . 19: 10, 672-680. 2014 Blaby, et. al., …
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I-Min (Amy) Chen
Dr. I-Min A. Chen received her Ph.D. in Computer Science. Her research has been focused on semantic and … Lab. Dr. Chen is currently the Microbiome Computational Resource Lead at the JGI, responsible for the data management infrastructure of …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… of peat moss drives insight into carbon storage   The Science Boggy peatlands, which hold much of the Earth’s … as carbon sinks and minimize their role as carbon sources. Summary Sphagnum, a genus of just under 400 mosses … of Science User Facility at Lawrence Berkeley National Laboratory, and the HudsonAlpha Institute for Biotechnology …
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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics … driving force behind the development of numerous genomic resources that fostered the widespread adoption of Brachypodium … his postdoctoral studies at the Carnegie Institution for Science where he studied the molecular basis of a plant …
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A Mentor’s Perspective on Training the Next Generation
Over the years, hundreds of interns have come to the JGI from all parts of the globe to gain lab experience and contribute to ongoing projects. In one … they’ve all mentioned how invaluable their time at the JGI was and how great it was to have an experienced career …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
Back in 2011, JGI-supported researchers published a paper in the journal Science . It detailed how they’d used metagenomics to …
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