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JGI@25: Solving the Mystery of the Missing Oil
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … Over the next decade, the JGI’s single cell genomics and metagenomics capabilities were harnessed in several Lab …
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Learning to Look
Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an algorithm that a … search tool combed through more than 70,000 microbial and metagenome datasets, ultimately identifying more than 10,000 … result of this hidden diversity of inoviruses now overhauls our perception of this virus group – from minor curiosities …
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JGI announces final round of 2022 Functional Genomics awardees
… genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that … deadline is July 31. You can learn more about our Community Science Program here .  …
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Dan Rokhsar
Genomics group, and is past lead of the Eukaryotic Genome Program (2010-2019), and JGI Chief Informatics Officer … Laboratory 2000 John Simon Guggenheim Fellow 2000-present Program Director, Berkeley NHGRI Training Program in Genomics and Computational Biology … Education … …
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Tracing the Evolution of Shiitake Mushrooms
… diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the same place they often source their nutrients — the shii tree, a Japanese relative … sequencing were enabled by the Community Science Program (CSP) at the U.S. Department of Energy (DOE) Joint …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
So a few years ago, when they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put … Mendota. In this episode: the software evolution that made metagenome assemblies like this possible. …
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When “The Blob” Made It Hotter Under the Water
… climate change impact on marine microbial communities. The Science A team of researchers tracked the impact of a … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of Hallam’s approved proposal through the Community Science Program . The proposal focuses on uncovering the metabolic …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… 2011, JGI-supported researchers published a paper in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The …
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Computationally Classifying Fungal Lifestyles
… on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … work was enabled in part through  JGI’s  Community Science Program (CSP) , as several approved proposals have …
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Taking Stock of the Known and Unknown Microbial Space
… global research community.  Published January 17, 2025 in Science Advances , researchers at the U.S. Department of … genes on nearly 2 million genomes, including isolates, metagenome-assembled genomes (MAGs) with varying quality … representation. “When it comes to isolate genome data, our real-world touchstones, we’re just scratching the …
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JGI announces second round of 2023 New Investigator awardees
Felipe Valdez-Nuñez  The JGI is eager to work and share our tools with a widening circle of researchers. That’s why … — through the New Investigator call under our Community Science Program .  Below find a list of the second round of …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this … that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge National Lab is home to two …
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